Micropterus salmoides (largemouth bass): 119906985
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Entry
119906985 CDS
T07309
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04510
Focal adhesion
msam04512
ECM-receptor interaction
msam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119906985 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119906985 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119906985 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
msam00536
]
119906985 (col1a2)
Glycosaminoglycan binding proteins [BR:
msam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119906985 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
119906985
NCBI-ProteinID:
XP_038580424
LinkDB
All DBs
Position
Unknown
AA seq
1356 aa
AA seq
DB search
MLSFVDTRILLLLAVTSYLASCQSSGRLKGPRGDKGPRGDRGPQGPNGKDGKPGLPGPPG
PPGPPGLGGNFAAQYDGAKAPDPGPGPPGLPGPRGPPGPPGPPGPQGHTGHAGEPGEPGQ
TGPIGARGPPGPPGKAGEDGNNGRPGKPGDRGVPGPQGARGFPGTPGLPGMKGHRGYTGL
DGRKGEPGAAGAKGEPGAHGSSGSPGLAGARGMPGERGRAGPAGPAGARGADGNVGPAGP
AGPLGAAGPPGFPGGPGPKGEVGPAGATGPSGAQGPRGEPGPNGVVGPVGPAGNPGANGL
NGAKGAAGTPGVAGAPGFPGPRGGPGPQGPQGSTGQRGLSGDPGAQGIKGDSGPKGEPGN
AGPQGPPGSQGEEGKRGSTGELGATGPAGSRGARGAPGGRGMPGAEGRTGPIGMPGARGA
TGSAGPRGPPGDAGRAGEPGAAGLRGLPGSPGSSGPPGKEGPAGPAGQDGRSGPPGPTGP
RGQPGNIGFPGPKGPSGEPGKPGDKGGTGPTGLRGAPGPDGNNGATGPAGLAGGAGEKGE
QGPAGAPGFQGLPGPAGAAGEAGKPGDRGIPGDQGASGPAGGKGERGNPGAAGASGPQGS
MGPRGPSGAPGTDGGKGEPGAAGAAGGPGHQGPGGMPGERGAAGAPGGKGEKGEAGHRGP
DGNAGRDGSRGMPGPAGPPGPTGANGDKGESGSFGPAGPAGPRGPSGERGEVGPAGAPGF
AGPPGADGQPGARGERGPAGVKGEVGPAGPAGPAGQSGPAGPAGAPGPAGSRGDNGPAGL
TGFPGAAGRVGAAGPAGIVGPPGLAGPPGKDGPRGLRGDPGPSGPSGEQGMVGPPGPAGE
KGSPGESGPPGPPGAPGTSGPLGLQGFVGLPGARGDRGSPGGAGGLGEPGRVGPPGPPGA
RGPPGNIGLPGMTGPQGEAGREGNPGNDGPPGRPGAAGFKGDRGEPGPAGSMGLAGAPGP
SGPTGAAGRPGNRGEPGSSGPAGPAGPAGARGAAGPAGPRGEKGVAGEKGERGMKGLRGH
AGLQGMPGPSGPSGDSGPAGPAGPAGPRGPAGPHGPPGKDGRAGSHGTIGSPGARGPPGY
VGPAGPPGSPGLPGPPGPAGGGYDVSGYDEYRADQPALRAKDYEVDATIKSLNTQIENLL
TPEGSRKNPARTCRDIKLSHPEWSSGFYWIDPNQGCSNDAIKVFCDFTTRETCIYAHPES
IAQKNWYRSTESKKHVWFGETINGGTEFTYNDETLSPQSMATQLAFMRLLSNQATQNITY
HCKNSVAYMDGESGNLKKAVVLQGSNDVELRAEGNSRFTFSVLEDGCTRHTGEWSKTVIE
YRTNKPSRLPILDIAPLDIGGAEQEFGLDIGPVCFK
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacccggattctgttgctgcttgcagtaacttcatacctagca
tcatgtcaatcctcgggaagactcaagggtcccagaggagacaaaggacctcgaggtgac
aggggtcctcaaggcccaaatggaaaagatggcaaacccggactccctggcccccctggc
ccccctggtccccctggacttggaggaaactttgctgctcagtatgatggtgcaaaagct
cctgatcccggccctggacccccaggtttaccaggacccagaggccctcccggacctcct
ggaccccctggacctcagggacacaccggacacgctggtgagcccggagagcccggacag
actggccccattggtgctcgtggaccccctggaccccctggcaaagctggagaggacggt
aacaatggcagacctggtaagcctggagacagaggtgtccctggcccacagggcgctcgt
ggattccccggaacccctggacttccaggaatgaagggacacagaggttacactggtctg
gatggacgcaagggagagcctggtgctgctggtgccaagggagaacctggtgcccatgga
tcttctggaagtcctggactggctggagctcgtggtatgcctggtgagagaggtcgtgct
ggccctgctggccccgctggtgctcgtggtgctgatggcaatgttggacccgccggccct
gctggtccccttggtgccgctggtcccccaggtttccccggtggccccggacccaaggga
gaggttggacccgctggagctactggcccctctggagctcagggacctagaggagagcct
ggtcctaatggcgttgttggccccgttggtcccgctggtaaccctggtgctaatggtctg
aatggagccaagggagcagctggcacccctggtgttgctggagctcctggattccccgga
ccaagaggaggacctggaccccagggccctcagggttctactggacagagaggtctctct
ggagatcccggtgctcagggtattaagggagactctggtcccaaaggagagcctggcaac
gccggacctcaaggaccccctggatctcagggtgaggagggcaagagaggatccactggt
gagcttggtgctactggacctgctggcagccgtggagctagaggcgctcctggcggccgt
ggtatgcctggtgcggagggaagaactggcccaattggtatgcctggcgcccgtggtgct
accggctcggccggacctcgtggaccccctggagatgctggccgcgctggtgagcctggt
gcagctggtctcaggggtctcccaggaagccccggaagctctggacccccaggaaaggag
ggacctgctggtcctgctggacaagacggccgctctggacctcccggcccaactggacct
agaggccagcctggaaacattggcttccccggacccaaaggaccttctggcgagcctggt
aagcctggagacaagggaggcactggccctactggactgagaggagcccctggacctgat
ggcaacaatggagccactggccccgctggacttgctggaggtgctggtgagaagggagag
cagggacctgctggagctcctggcttccagggtctgcctggtcccgctggagctgctgga
gaggctggcaagcccggagacagaggtatcccaggagaccagggagcttctggacctgcc
ggtggcaaaggcgagcgtggtaaccctggtgctgctggagctagtggacctcagggatca
atgggaccccgtggaccctctggagcccctggaaccgatggtggcaagggagagcctggc
gctgctggagctgctggtggtcctggacatcagggaccaggtggcatgccaggtgagcgt
ggagcagctggtgcccctggaggcaagggagagaagggagaggctggacacagaggaccc
gacggcaatgctggcagagatggttcccgtggtatgcctggacccgctggaccccccgga
cccaccggagccaatggtgataagggtgagagtggttccttcggacctgctggccctgct
ggacctcgtggaccctctggagagcgtggagaagtcggacctgctggagctcccggattt
gccggaccccctggcgctgatggtcagcccggagctagaggagagcgtggacctgctgga
gtaaagggagaagttggccccgctggccctgctggacctgctggacagtctggacctgct
ggtcctgctggtgctcctggacctgctggcagtcgtggagataacggccctgctggtctg
actggtttccccggtgctgctggcagagttggtgctgctggtcccgctggtattgttgga
ccccctggccttgctggtccccctggtaaagatggtcctcgtggtctccgtggtgatcct
ggtcccagtggtccttctggagagcagggtatggttggacctcctggtccagctggagag
aagggatccccaggagagtctggtccccctggtcctcccggtgctcctggaaccagtggt
cctcttggacttcagggatttgttggtctgcctggtgctagaggagatcgtggttctcct
ggtggggctggtggtttgggagagcctggtagagttggacctcctggtccacctggagcc
cgtggtccccctggaaacattggcctgcctggtatgaccggaccccagggagaggctgga
cgtgagggtaaccctggtaacgatggaccccctggtcgtcctggtgctgctggattcaag
ggagaccgtggtgagcctggacctgctggttccatgggacttgctggtgcccccggacct
tctggacccactggagctgctggcagacctggaaaccgtggagagcctggctcctctggt
cccgctggacctgctggccccgctggagctagaggtgccgctggacctgctggaccccgt
ggtgagaagggagttgctggagaaaagggagagagaggcatgaagggtctgcgtggacat
gctggtctccagggaatgcctggaccttctggaccttctggtgacagtggacctgctgga
cctgctggacccgctggacccagaggacctgctggaccccatggaccccctggtaaggac
ggcagagctggttcccatggtactattggttctcctggtgctcgtggacctcctggatac
gttggacctgctggtcctcctggatctcccggtctgcccggacctcccggccccgctggt
ggtggatatgatgtttctggatatgatgagtacagagctgatcagcccgctctgagagcc
aaggactacgaggtcgatgccaccatcaagtcgctcaacactcagattgagaacctgctc
acccctgagggatccaggaagaacccagcccgcacctgccgtgacatcaagctcagccac
cccgagtggagcagcggattctactggattgaccccaaccagggttgctctaatgatgcc
atcaaggtcttctgcgacttcaccacccgtgagacctgcatctatgcccaccctgagagc
atcgcccagaagaactggtacagaagcaccgagagcaaaaagcacgtctggttcggagag
accatcaacggtggtactgagtttacctacaacgatgagaccctcagcccccagagcatg
gccacccagctcgccttcatgcgcctgctgtccaaccaggctacccagaacatcacctac
cactgcaagaacagcgttgcctacatggatggcgagagcggcaacctgaagaaggctgtg
gtgctccagggctccaacgatgtggagctgagggcagagggcaacagccgcttcaccttc
tccgtgctggaggatggctgcactagacacactggtgaatggagcaagacagtgattgag
tacagaacaaataaaccatctcgcctccccatcctcgacattgcacctttggacattggt
ggagctgaacaggagtttggtttggacattggcccagtctgtttcaaataa
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