Micropterus salmoides (largemouth bass): 119907011
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Entry
119907011 CDS
T07309
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119907011 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119907011 (cnot3b)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119907011 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119907011 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
7tm_6
Motif
Other DBs
NCBI-GeneID:
119907011
NCBI-ProteinID:
XP_038580475
LinkDB
All DBs
Position
Unknown
AA seq
935 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVDNRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGTWLTNTIDTLNMEVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKFIEKHRHHI
RMLETILRMLDNDSVQVDAVRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLEEIPQTLVA
TSPPGNLHLEEEIFQHSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEVSQSP
VKNGNPSSSLSCSSSSSSSSSSSSSSSSSSSSVSGLTSSSLVSMATIAAGGSSGSGANSH
HGNSGGLLSNTCVGSYSNATQQQPHPSAQQPQAKNLVSSSSSAPISIPSTSTNSHQASSA
PSPPNASTHGLFTSNSQPQILSGPPPTSNSLGLSLGLSLGKGSMSSSITTSPMSGGLGLS
GMPASLCTMANLLSSSTPAPYAQAAASGAVGSGLPGSLGGVSTTSSNSTLGSIGSGSITV
GGPTSSTGGLLGSASVVTSIGSGILGFGSGQSGVQVSSLVSLSPVGGLAPGSGVGVIGSS
VGSSGSAGGGVMGGNSSLSVRPPSRQKQNGSSSYSAVVADSTTDSALNSASQSQSSQSSS
LTSTANQPKDTGPSLLGSLSLSSSSPSPAFYSEAKTVSGSSLLNGPLSYSQSSDVIKPQE
PLSSLKSMAERAALRSGMEGDMPSLHLTPDIFPSSTTAPSGPPTAPQPSLSEVSIPPSLG
VCPLGPVPVSKDQLYQQAMEEAAWSHMPHPSDSERIRQYLMRNPSPTLPFHHQMPPPHSD
TVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDE
FEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggtgaaatagatcgatgtctgaaaaaagtagcggaa
ggagtggaacagtttgaagacatttggcaaaaacttcacaatgcagccaacgcgaaccag
aaggagaaatatgaagcagacctcaagaaagagattaaaaagctacagcgtcttcgagac
cagatcaagacgtgggtggcatccaacgagataaaagacaaaaggcagctagtagataac
cgcaaactcatcgaaacgcaaatggagcggttcaaaatagtggagagagaaacaaagacg
aaagcgtattcaaaagaagggttgggtctggcccagaaggtggacccggcccagaaggag
aaggaggaggtcggcacgtggctaacgaatacgatagacacgttgaacatggaagtggac
caatttgagagcgaagtggagtctctttcggtccagacgagaaaaaagaaaggagacaag
gagaagcaggacaggattgaagagctgaagaagtttattgagaaacatcggcaccacatt
cggatgctggagaccatactgaggatgctggacaatgactcagtgcaggtggacgccgtc
aggaagatcaaggatgatgtggagtattatctagactcgtcacaagatccagactttgag
gaaaatgagtttctatatgacgacctggacctggaagagatccctcagacgctggtcgcc
acctcaccaccgggaaacttgcacttggaggaagagatcttccagcactccagcagcaca
cccacctccaccacctcatcttcacccatccccccctcacctgccacttgcactacggag
aactcagaagatgacaagaagaggggacgttcaacagacagtgaagttagtcagtcacct
gtgaagaacggaaacccctcttcctcgttatcctgttcctcttcctcttcctcatcttct
tcttcctcctcctcctcttcctcatcttcttcctccgtctctggactgacctcatcctca
ctggtctctatggcgaccattgctgcaggaggaagcagcggctctggggccaacagtcat
cacggaaactcggggggtctcctctccaacacttgcgtaggcagctacagcaacgccacc
cagcagcagccgcacccgtcagcacagcaaccacaggccaaaaacttagtgagctcctcc
tcctcggctcctatctccatccccagcacctccaccaacagccaccaggcctcctctgcc
ccttctccccccaacgccagcacacacgggctcttcacttcaaacagccagccccagatt
ctgtcagggcccccgcccacctccaacagtcttggcctcagcctgggcctctctctaggg
aaaggcagcatgtccagttccatcaccaccagcccaatgtccgggggcctgggcctgtca
gggatgccggcgtccctgtgcaccatggcgaacctcctgtccagctccacccctgcaccc
tatgctcaggcagctgcctcaggcgcggtcggctccggtctaccgggttctctgggcggc
gtcagcaccacgtcatccaacagcacgttgggctccatcggcagtggaagcatcacagtc
ggcgggccgacgtcctcaacaggaggtctgctgggctcagcttcggtggtgaccagcatc
ggctctgggattctgggttttggctctggtcagtcgggtgtgcaggtgtcttccctagtg
tcacttagcccagtaggaggtttagcgccgggtagcggagtaggagtcatcgggagcagc
gtaggcagctctggatcagcagggggcggagtgatgggaggaaactcgtcgctttccgtc
aggccgccgagccgtcagaagcagaatggtagctctagttacagcgctgtggtagcagac
agcacaacagactccgccctcaacagtgccagccaatcacaaagcagccaatcatcgtct
ctgacctccacagccaatcagcctaaggacactggtcccagtttactggggtctttgagt
ttgtcgtcgagctccccatcgccagccttctacagcgaagccaaaacagtgagcggcagc
agccttctgaacgggccactgtcctactcacagtcctccgacgtcatcaagccccaggag
cctctgagcagcctgaagtccatggccgagcgagcagcactccgctcagggatggaggga
gacatgccctccctgcacctcaccccagacatcttccccagcagcactacggccccctcg
ggccccccgacagcacctcagccctcgctgtcagaggtcagcatccccccgtcattgggg
gtctgcccgctggggccggttcccgtgtccaaagaccagctctaccaacaagccatggag
gaggcggcgtggtcgcacatgccccacccgtccgactccgagaggatcaggcagtacctg
atgaggaaccccagccccaccctgcctttccaccaccagatgccaccgccccactctgac
actgtagagttttaccagaggctttccacggaaaccctcttcttcatcttttactacctg
gagggcaccaaggcccagtatctggcagccaaagccttgaagaagcagtcatggaggttc
cacacaaagtacatgatgtggtttcagaggcatgaagaacccaagaccatcactgatgag
tttgagcagggaacgtacatttactttgactatgagaaatggggccagcggaaaaaggag
ggcttcacgtttgagtaccgttacctggaagaccgagaccttcagtga
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