Micropterus salmoides (largemouth bass): 119907369
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Entry
119907369 CDS
T07309
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119907369 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119907369 (skiv2l)
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119907369 (skiv2l)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119907369 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
119907369 (skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
NirdL-like_HTH
Motif
Other DBs
NCBI-GeneID:
119907369
NCBI-ProteinID:
XP_038581031
LinkDB
All DBs
Position
Unknown
AA seq
1245 aa
AA seq
DB search
MDKIDMPPMGPMDLPLSLLEMGCSGRFELITHPMPGQPLPPQSTLPHGLPPTSLSLETEV
KKQFLWDPAWLPIHDTDFAFQKFLKVTKREVNVDSLLNCTSSPLHSGLSVVRDPTTGMLL
DFTEVLLENTGLSAKNSLSFQRQPGPPSESLRGSNTNYPFLPGGMEELSLDQIQKKSQLE
EDIDFENDLLKVPPGLKAGMDFTDKDAKIAKAEVNLMSLLSTLDDIADLQLEEEEKVEGK
GSEEALKLPRTNSLEDLGIKDAVSSSAPPAKGRDEKSKPNENPEENKKWAIPVNITAPCD
DFYKRIPNPAFKWPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQISPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRH
IYVISTMKRPVPLEHYLYTGNSTKTQKEMFLLVDAVGNFLTKGYYAAVDAKKERTSKHAQ
SFGSKNTSHTSSSQDRAVWLTLLHFLSQRQQTPVVAFTFSRTRCDENARSLDSMDLTTSV
EKAEIHSFFQKSLSRLRGGDRQLPQILLMRGLLKRGIAVHHSGILPILKEVIEMLFSRGL
VKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGTV
IILCKAGVHEMADLHVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSENHR
DTQANEKRISQLKQMLSSLPPLDTEGQLSDLLPYYHTVTELRTTTEALQRAVLESVNGLK
ALSVGRVVLVNNKQHLNALGVILQVSNDSVNRTFTALILCEKGNEEGEGKGNNCNAFAHL
YNTALFIPEGPCSHTVQKLKLQDISAITVKTLKVIPERIIDNYNKRQQPRFRLDPPGQAI
STATQELLRLAEASPGGIASLDPVNDLQLKSMAVVEDSMRLRVLQDSLREFNCIHSPTFA
EQFARVKERMSVQEELDRLLFLVSDQSLSLLPEYHQRIKVLQSLQYIDSSGAVQLKGRVA
CQISSHELLLTELLFENVLSPLAPEESAALLSCLVFTQNTQVEPHITNTLQEGIDRVLSV
AKRIGELQRDCGIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVVRCIQ
RLDEVLKEVRQAARIVGDSVLGSKMERASLAVRRDIVFTASLYTH
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaatagatatgccccctatggggcccatggacctgccgctgtccctgctggag
atgggatgctctggcaggtttgaactaatcacacacccaatgcctggccagcctttgcct
ccacagagcacgctcccccatgggcttcctcccaccagcctcagcctggagacagaagta
aagaaacagtttttatgggaccctgcctggcttcctatacacgacacagactttgccttc
cagaagtttctcaaggtgactaagagagaggttaatgtcgactctctactcaactgcact
tcgtctccacttcactctggtctctctgttgtcagagatccaaccacagggatgctgctg
gacttcacagaggtgttactggagaacacgggcctgtcagcaaagaactccctttcattt
caacgccaacccgggccaccttcagagagccttcgaggaagtaacaccaactaccccttc
ctccccggaggaatggaggagcttagtctggaccaaatccagaagaaatctcagctggag
gaggacatagactttgagaatgatttactcaaagtcccacctggacttaaagctgggatg
gacttcactgacaaagatgccaagatagcaaaggcagaggtcaacctcatgtccctcctg
tcaacattggatgacatcgctgatttgcaacttgaggaagaggagaaagtagaaggcaaa
ggaagtgaagaagctctcaaactacccagaacaaacagccttgaagacctgggcatcaag
gatgctgtgtcatcttcggctcccccagcgaaaggaagagatgagaaatcaaagccaaat
gagaacccagaggaaaataaaaaatgggccatccctgtcaacataactgcaccctgcgat
gatttctataaacgcatccccaacccagctttcaagtggccgtttgaactggatgttttc
cagaaacaggctgtgttgcggctggaggctcacgactctgtatttgtagccgcgcacaca
tcagctggcaaaacagtggtggccgaatacgccatcgctctgtcacagaaacacatgaca
aggaccatctacacctctcctatcaaagccctgtccaatcagaagttcagagactttaag
aacacctttggagacgttggactcctgacgggtgatgtccagatcagtcctgaatcttca
tgtctcatcatgactacagagatcctcaggtctatgctttacaacggctccgaggtcatc
agagacttggagtgggtaatctttgacgaggttcactacatcaacgatgctgagagaggg
gttgtgtgggaggaggttttgattatgcttcccgatcacgtcagtatcattctccttagc
gccacagtgccaaatgctctggagtttagcgagtggatcggtcgtataaagaagaggcat
atttacgtgatcagcacaatgaagagacctgtgcctttggagcattatctctacactgga
aacagcaccaagactcagaaagagatgttcctgctggtggatgctgtgggcaacttcctc
actaaagggtactatgcagctgtcgatgccaagaaggagcgcaccagcaaacatgcccaa
tcatttggttcgaaaaatacttctcacacctcatcgagtcaggaccgagcggtgtggctc
acactcttgcacttcctgtcccagcggcagcagacgcctgtggttgcgttcaccttctct
cggacgcggtgtgacgagaacgcccgctcgctggactccatggacctgaccacctccgta
gagaaggccgagatccactctttcttccagaagagtctgagtcgcctccgaggaggagac
cgacagctgcctcagatcttgctcatgaggggactgttgaagagggggatagcagtccat
cacagcgggatcctgccgatactgaaggaggtcattgagatgctcttttcacgcggtctc
gtaaaggtgctgtttgccaccgagacatttgcaatgggagtgaacatgcctgccaggact
gtggtgttcgacagtatcaggaaacacgacgggaccggctttagaaatctgctgccaggt
gaatatattcagatggcgggcagagcgggcaggagaggtctggacgccacaggcaccgtc
atcattctgtgtaaagctggagttcacgagatggcagatctgcatgtcatgatgctgggt
aaacctaccgtgctccagtcccagttcagactgacctacactatgatcctcaacctgctg
cgagtcgaagccctccgtgtgaccgacatgatgaggaggagcttttcggaaaaccaccgg
gacactcaggctaatgagaagaggataagccagctgaagcagatgttgtcctctctacct
cccctggacacagaaggccagctgtctgacctgctgccttactaccacacagtgacggag
cttcgaaccaccactgaagcccttcagcgtgctgtcctagagtctgtcaacgggctgaaa
gctctgtctgtgggacgagttgtgttggttaacaacaaacagcatctcaatgccctggga
gttatcctacaggtgtccaatgactctgtgaatcgcaccttcacagctctcatcttgtgt
gagaagggaaacgaggaaggggaaggaaaaggcaacaactgcaatgcttttgctcacctc
tacaacacagccctcttcatacctgaaggcccttgcagccacacggtgcagaagctgaag
cttcaggacatctcagccatcacagtgaaaaccctcaaagtgattccagagaggatcatc
gacaactacaacaagaggcaacagccacgattcaggcttgaccctcccggccaagccatc
tccacggcgacccaagagctcctgcgattggccgaggccagccccggcggcattgcaagc
ctcgaccccgtgaacgacctccagttgaagagtatggctgtggtggaggactccatgagg
ctccgtgtgctgcaggacagcctaagagagttcaactgcatccactcgcccacttttgca
gagcagtttgctcgggttaaggagaggatgagtgtgcaggaggagctggaccggctgctg
ttcctggtgtcagaccagtctctgtctctgctgcctgaataccaccagaggatcaaggtg
ctgcagtcgctccagtatatcgacagcagcggggcagtgcagttgaaaggccgtgtagcc
tgtcagatcagcagccacgagctgctgctgaccgagctgctgttcgagaatgtcctgagc
ccgctggcgccggaggagagcgccgccctgctgtcctgtctggtcttcacacagaacaca
caggtggagccgcatattaccaacacactgcaggagggtattgatcgggtgctgtcagtg
gccaagcgcatcggagagctgcagagggattgtgggataccacagacagctgaggagttt
gttggccagttcaagtttggcttgacagaggtggtgtactgctgggccagaggcatgccg
tttgcagagatcgcccagctgacagacgtccaggagggcacggtggtccgctgcatccag
cgccttgacgaggtgctgaaggaggtgcgacaagccgcccgcatcgtgggagactccgtc
ctggggagcaagatggagagggcctccctggctgtccgcagggacattgtcttcaccgcc
tccctctacacccactga
DBGET
integrated database retrieval system
