KEGG   Micropterus salmoides (largemouth bass): 119908286
Entry
119908286         CDS       T07309                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
msam  Micropterus salmoides (largemouth bass)
Pathway
msam03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:msam00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119908286
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:msam03041]
    119908286
Spliceosome [BR:msam03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    119908286
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40 Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_Gbeta WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st NBCH_WD40 PRP4 Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_WDR11_1st Beta-prop_Nup120_160 WD40_like Tricorn_2nd Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 119908286
NCBI-ProteinID: XP_038581923
LinkDB
Position
Unknown
AA seq 510 aa
MSDEEDVAPAMKRSRVFYGSLEEKERERLKSEAASSASTGSDAVKAGIEAGNINISSGET
LELEERVSERQQEALAAFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRER
LRSVLSVVGPDALKKSRRDEERAKRTQDECQQTWYHEGSASLKDARLWLARYSLPRAMRR
LEAARAQRDVAEGTRTIRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATGSWS
GLCKLWSIPDCSLIRTLRGHNTNVGAVVFRPQAGISLDQSDVSLASCAADGSVKLWNLES
DEPVADIEGHSQRVSRVSWHPSGRFLGTTSYDNSWRLWDLEVQEEILHQEGHSKGVHDIH
FHPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSLHFSPNGYHLATGSGDHTCK
VWELRNRKCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKVWSHPGWTPMKTLAGHE
GKVMSVDVSPDGKLIATSSYDRTFKLWLSE
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgtccgacgaggaggatgtggctccggccatgaagaggagccgtgtgttctacggtagc
ctggaggaaaaagagcgcgagcggctgaaatcggaggcggcgagcagcgcatcaacagga
agtgatgcggtgaaggcgggcatcgaggcggggaacatcaacatctcgtcaggagagact
ctggagctggaggagcgcgtcagcgagcgtcagcaggaagccctcgccgcgtttgagcgg
aggcggcgagcgcggcagatcaccgtctccaccgacgacgcagaggtgaaggccggcctc
cgggcgctcggagagccaataacgttgttcggagagggaccggctgaccgccgggagagg
ctgcgcagcgttctgtctgtggtcggtccggatgctctgaagaagtccaggagagacgag
gagagagccaagaggacccaggacgagtgccagcagacgtggtaccatgaaggctccgcc
tccctgaaggacgctcgactctggttggccagatactctctgccacgggcaatgaggcgt
ctggaggctgcacgtgctcagagggatgttgcagagggaaccaggacgatacggcaacag
gagctgcacaagagcctgaggaatctcaacaacttctgcagtcagatcggtgacgaccga
ccaatcagcttctgccacttcagccccgactccaaaatgctggccaccggctcctggagt
ggtctttgtaagctgtggtccatccccgactgcagcctgattcgcacactcagaggacac
aacacgaatgtgggcgcggtcgtgttccgcccgcaggccggaatctctctcgaccaatca
gacgttagcttggcctcctgtgctgctgacgggtctgtgaagctgtggaacctagagagt
gacgagccagtggcggacatcgagggtcacagtcagcgagtttctcgagtgtcctggcat
ccttcagggaggttcctgggaaccaccagttatgataactcatggcgtctgtgggatctg
gaggttcaggaggaaatcctccatcaggagggtcacagcaaaggagtccacgacatccac
ttccatcctgacggctcgctggctgccaccggagggctggatgcgttcggcagggtgtgg
gaccttcggacaggacgctgtgttgttttcctggagggacacctgaaggagatctacagc
ctacacttctcgcccaacgggtatcacctggcgacaggaagtggtgatcacacctgtaag
gtgtgggagctgaggaacaggaagtgtctgtacacagtccccgcccaccagaacctgctg
tccgctgtccgcttccagcccacagacggtcacttcctgttgactggagcgtacgacaac
acggcgaaggtttggagtcacccgggctggacgccgatgaagacgctcgccggacacgag
gggaaggtgatgtccgtcgacgtgtcacctgacgggaaactgatcgccaccagctcctac
gaccgaaccttcaaactctggctgtctgagtga

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