Micropterus salmoides (largemouth bass): 119908807
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Entry
119908807 CDS
T07309
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119908807 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119908807 (cpsf2)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
119908807 (cpsf2)
U7-dependent histone pre-mRNA processing factors
119908807 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
119908807
NCBI-ProteinID:
XP_038582607
LinkDB
All DBs
Position
Unknown
AA seq
789 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYAVDFNHKR
EIHLNGCTLESISRPSLLITDSFNATYVQPRRKQRDEMLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGAYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKDLEEYLEKDKMKKEAAKKLEQAKEVDVDSS
DESDMDDDLDQPVAVKMKHHDLMMKAEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRLEEFLVPELQATEEEKSKLESGLTNGDEPMDQDLSVVPTKCISSVENLEIRARVTYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFSKDIKVYTPKLQETIDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEEGVKDEEEDGS
GELAMDVAPDLDIDHNATAVAAQRAIKNLFGEDEKEQSEESDVIPTLEPLPPHEIPGHQS
VFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRE
LLYQQYAVV
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattatcaagctgacagccgtgtcaggggttcaggaggagtcggccctctgt
tacctgctgcaggtggatgagttccgcttcctcttggactgtggctgggatgagaacttc
tcaatggacatcattgatgctatgaaacgatatgttcatcaggtcgatgctgtgctcctc
tcccaccctgaccccatacacctgggagccctgccatatgccgtggggaaactgggtcta
aactgcactatctatgctacaattcctgtctacaagatgggtcagatgtttatgtatgat
ctgtatcagtctcggaacaacagtgaagatttcacactgttcacccttgatgatgtcgac
tgtgcttttgataaaatccagcagctgaaatactctcagattgtcaatctgaaagggaaa
gggcatggtctttccatcactcctcttccagctggtcacatgattggaggcactatttgg
aaaattgtgaaggacggggaggaggagattatttatgctgtggacttcaaccataagaga
gagatccacctcaacggctgcacgttggagagcataagtcgtccttcactacttattaca
gattccttcaatgctacatatgtacagccacggcgcaaacaaagagatgaaatgctcctt
accaatgtaatggagacccttcgtggtgatggtaatgtccttattgctgtggacacagct
ggacgtgtgttggagctggctcagctcctggaccagatttggaggacaaaggatgctggg
cttggagcttacccgcttgcactgcttaacaatgtcagctataatgtggtggagttctcc
aagtcccaggtggagtggatgagtgacaagctcatgaggtgttttgaagacaaaagaaac
aaccccttccagttccgtcacttgaccctgtgccacagtcttgcagacctggcccgggtg
ccgagccccaaggtggtgctttgcagccagccagaccttgagtctggcttttccagagaa
ctcttcattcagtggtgccaagatgccaaaaactccgtaatcctaacctaccgcactaca
cctggaaccctagcccgctacctcatcgacaaccccggagagaagatgctggatctggag
gtgaggaaaagagtgaagcttgaaggcaaggacctggaagaatacctcgaaaaggataaa
atgaagaaagaagcagctaaaaagcttgaacaagcaaaagaggtggatgtagactccagt
gatgagagtgatatggacgatgatctggatcagccagttgctgtgaaaatgaaacaccac
gacctgatgatgaaggccgaggggagccgcaaaggcagtttcttcaaacaagccaaaaaa
tcttatccaatgttccccacacatgaagagagaatcaaatgggacgagtatggggaaatc
atcaggctagaagagtttctagttcctgaactacaagccacggaggaggagaaaagcaaa
ctggaatccgggttgaccaacggtgatgagcccatggaccaggatctctctgtcgttcca
accaaatgcatctccagtgtagaaaatcttgaaattagagcgagggtaacctacatagat
tatgaaggtcgttctgacggcgactccatcaagaagattattaatcagatgaagcccaga
cagctggtgatcgttcacgggcccccagaggccagccttgacctggcggagtcctgcaaa
gctttcagcaaggacatcaaagtctacacacccaaactgcaagagaccatagacgccacc
agtgaaacacacatctaccaagtgcggttgaaagactccttggtgagctctctgcagttc
tgcaaggccaaagacacagagctggcctggattgatggcgtactggacatgcgcgtggtg
aaggtggacacgggcgtgatgctggaggagggtgtgaaagacgaggaggaggacggcagc
ggagagctggccatggacgtcgcccccgatcttgacatcgaccacaacgccacagcggtg
gcggcgcagcgcgccattaagaatctgttcggggaggacgagaaggagcagtctgaagag
agcgatgtcattcccactctggagccactgcctccacacgagattccagggcatcagtcg
gtgttcatcaacgagcctcgcctgtctgacttcaagcaggtcctgctgagagagggcatc
caggctgagtttgtgggcggggtgctcgtctgcaacaacatggtggccgtccgcaggacg
gaggctggacgcattggcctggaaggctgcctttgtgacgactactataagatccgggag
ctgctgtatcagcagtacgccgtggtatag
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