Micropterus salmoides (largemouth bass): 119908973
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Entry
119908973 CDS
T07309
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119908973 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119908973 (hbs1l)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119908973 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
119908973
NCBI-ProteinID:
XP_038582887
LinkDB
All DBs
Position
Unknown
AA seq
702 aa
AA seq
DB search
MSRHRNVRGYNYDEDFDDDDIYGQSVDDDYCCISPATANQFIYSRQERQVPKEEPLEEEY
EDEVVPLSPTISDNLDPLDQAKLYSCLDHMRTVLGDAVPDSVLTQAAIKCGFDPQRALDA
VLSEDTKTVPLTGSKSEETASVARVSLEKAPLPQRTKQEVIAEKAKSRDVSHNKLDSEVV
PKVARMTVSGKKQTMGFDVPSIGENGVVTASVRRGGSPENTAAAPTSDAMSKRPETPSKG
SNGEEAPTVPTPGRSSGKARQAINIKAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLY
LLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETNSKVVTL
MDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLA
VAVNKMDQVNWQQERFQEIISKLGHFLKQAGFKDSDVFYIPTSGLSGENLVTRSSVSQLT
SWFFGPSLLEQIDAFKAPQRSVEKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRILA
MPPNETCTVKGITLHDEALDWAAAGDHVSLTVTGMDIIKINVGCVFCEPKEPIRVCTRFR
ARILLFNIEVPITQGFPILLHYQTVSEPATIRKLISVLHKSSGEVLKKKPKCLSKGMNAI
VEIQTQRPVALELYKDYKELGRFMLRYVGSTIAAGVVTEIKG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacatagaaatgttcgaggttacaactacgatgaagactttgacgatgatgac
atatatggacagtctgtggacgatgactactgctgtatatcaccagcaacagcgaatcag
ttcatctactcacgtcaagagaggcaagtgccaaaggaggagcctttagaggaagaatat
gaagatgaggttgtacccttgtcccctaccatcagcgacaaccttgatcctcttgatcaa
gccaagctgtattcctgtctggaccatatgcggactgtgctgggagatgcagtgccagac
tcagtgctgacccaggcagccataaaatgtggattcgacccacagagggcactggatgca
gttttgtctgaagacactaagacagtcccacttaccggaagtaaaagtgaagagacggct
tcggtagcaagagttagcttggaaaaagcgccgcttccacaaagaaccaaacaagaggtc
attgctgagaaagctaaaagcagagatgtgtctcacaataaactggactctgaagtggta
ccgaaagtggcccgcatgaccgtctctggcaagaagcagaccatgggcttcgatgttccc
agcataggggagaacggcgtagtcactgcttcagtacgtcgaggtggcagccctgaaaac
acagccgcagcccctacctcagatgccatgtccaaacgtcccgagactccatccaaaggg
tcaaatggagaagaggcccccacagttcccacaccaggccgctcctctggaaaggcccgg
caggcaatcaatatcaaagctgagctggagaagaggcagggtggcaaacctctgttaaat
ttggtggttataggccatgtggatgcaggtaaaagcacactgatgggccaccttctttat
ctgctgggcaatgtcaacaagcgcaccatgcacaaatatgagcaggaatcaaagaaggcg
ggaaaggcctccttcgcttatgcttgggtcctggatgaaactggcgaggagagggacaga
ggtgtgacaatggatgtgggcatgaccaaatttgagacaaactctaaggtggtgaccctg
atggatgcgccaggacacaaagacttcatccccaacatgatcacaggagctgcacaggcc
gatgtggcggtgcttgtggtggatgccagccgaggagaatttgaggcaggcttcgaggcg
ggcggtcagaccagagagcatgccctgttggtgcgttcgcttggtgtcactcagctggct
gtagctgtcaacaagatggaccaggtgaactggcaacaagagcgtttccaagaaataatt
tccaaactgggccattttctcaagcaggccggatttaaggattctgatgttttttacatc
cccacgagcggcctgtcaggagagaacctcgtcaccagaagttcagtgtcgcagcttacc
tcgtggttctttggccccagcctgctggagcagattgatgccttcaaagctcctcagagg
tctgtagagaaacctttcagactgtgcgtctcagatgtattcaaagaccagggttcaggc
ttctgtgttactgggaaaatagaggctggttatattcagacaggagacagaatactggct
atgccccccaatgaaacgtgtactgtcaaaggtattactctacatgacgaggctctggac
tgggctgcagccggagaccatgtcagcctgactgtcaccggcatggacatcatcaagatc
aatgtgggctgtgtgttctgtgagcctaaggagccaattcgagtctgtactcgattcaga
gcccgaatccttctcttcaatatcgaggtccccatcacacaaggcttcccaatcttgctg
cattaccaaacagtcagtgagcctgcaaccattaggaaactgatcagtgttctacacaag
agcagcggtgaggtcctcaagaagaaaccaaagtgtttgagtaagggtatgaatgccatc
gtggagatccagacccagaggcctgtggcattagagctgtacaaggactacaaggaactg
ggccgcttcatgctacgatatgtcggctccaccattgctgcaggggtcgtcactgagatc
aaaggatga
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integrated database retrieval system
