KEGG   Micropterus salmoides (largemouth bass): 119909029
Entry
119909029         CDS       T07309                                 
Name
(RefSeq) histone deacetylase 2 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
msam  Micropterus salmoides (largemouth bass)
Pathway
msam03082  ATP-dependent chromatin remodeling
msam03083  Polycomb repressive complex
msam04110  Cell cycle
msam04330  Notch signaling pathway
msam04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:msam00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    119909029
   03083 Polycomb repressive complex
    119909029
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    119909029
   04350 TGF-beta signaling pathway
    119909029
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    119909029
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:msam03036]
    119909029
Enzymes [BR:msam01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     119909029
Chromosome and associated proteins [BR:msam03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     119909029
   HDAC complexes
    Sin3A-HDAC complex
     119909029
    BRAF-HDAC complex
     119909029
    REST complex
     119909029
    SHIP complex
     119909029
    MiDAC complex
     119909029
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     119909029
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    119909029
  Chromatin remodeling factors
   NuRD complex
    119909029
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 119909029
NCBI-ProteinID: XP_038582980
LinkDB
Position
Unknown
AA seq 493 aa
MAYTTAGGTKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ATAEEMTKYHSDDYIKFLRSIRPDNMSEFSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSA
AGSVKLNRQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH
HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIEDESYE
QIFKPVMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIRGHAKCVEYIKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDTDIPDELPYNDYFEYFGPDFKLHISPSNMTNQNTQEY
MDKIKQRLFENLRMLPHAPGVQMQAIPEDAVLDDTVDEDAEDPDKRLSIRATDKRIACDE
EFSDSEDEGEGGRRNVANHKKGAKRPRVDEDKKEGEEKRTDIKEEEKTKDSSAEKTDSKS
SAVLSCLKDPTLH
NT seq 1482 nt   +upstreamnt  +downstreamnt
atggcatacacgactgcgggtgggactaagaagaaggtctgctactactatgacggtgac
attggaaattactactatggacaagggcatcccatgaaaccacatcgtatccggatgact
cacaacctgcttctgaattatggactatacaggaagatggagatctatagaccacacaaa
gccacagcagaggagatgacaaaatatcacagtgacgactacatcaagttcctccgatcc
atacggccggacaacatgtccgagttcagcaagcaaatgcagcggttcaacgttggagag
gactgtcctgtgttcgatggcttgtttgagttctgccaactctccgctggtggctctgct
gctggttcagtgaagttaaaccgacagcagactgacattgcggttaactgggctggagga
cttcaccacgcaaagaagtctgaagcctctggattctgctacgttaatgacattgtgctg
gccatcttggagctgctcaagtaccaccagagggtgctctacattgatatagacatccac
catggggacggagtggaggaggccttctacaccacagacagggtcatgactgtgtccttt
cataaatatggggagtacttccctggaaccggagacctcagggatattggcgctgggaaa
gggaaatactacgctgtcaacttccccctgcgtgatggcatcgaagatgagtcatacgaa
caaatcttcaagcctgtaatggccaaggtgatggagatgtaccagcccagtgctgtggtt
cttcagtgtggtgcagactctctctcaggagatcgcctcggctgcttcaacctcaccatc
cgcggccatgccaaatgtgtggagtacattaagtccttcaacctcccgctgctcatgctg
ggtggaggaggatacaccatccggaatgtggcccgctgctggacctacgagaccgctgta
gctctggacacagacatccctgatgagctgccgtacaatgactactttgagtactttggg
cctgacttcaagctgcacatcagcccctccaacatgaccaaccagaacacacaggagtac
atggacaagatcaagcagcgactgtttgagaacctgcggatgctgcctcacgctcctgga
gtgcagatgcaggccatcccagaggacgctgtcctggacgacactgtggacgaggacgca
gaggatcctgacaaacgcttgtccatccgtgccacagataagaggatagcctgcgatgaa
gagttctctgattctgaggacgagggggagggaggcaggagaaacgtggccaatcacaag
aagggagcaaaaaggccaagagttgacgaagacaagaaggaaggcgaggagaagagaact
gatataaaagaggaagagaaaacaaaggacagcagtgcggagaagactgactcaaaaagc
tcagcggtgctgtcctgcctcaaggatccaactcttcactga

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