Micropterus salmoides (largemouth bass): 119910129
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Entry
119910129 CDS
T07309
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04140
Autophagy - animal
msam04142
Lysosome biogenesis
msam04145
Phagocytosis
msam04148
Efferocytosis
msam05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
119910129 (vps39)
04142 Lysosome biogenesis
119910129 (vps39)
04140 Autophagy - animal
119910129 (vps39)
04148 Efferocytosis
119910129 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
119910129 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
msam04131
]
119910129 (vps39)
Membrane trafficking [BR:
msam04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
119910129 (vps39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
119910129
NCBI-ProteinID:
XP_038584465
LinkDB
All DBs
Position
Unknown
AA seq
876 aa
AA seq
DB search
MHDAYESVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVLSKAKGATLFACDLQQTSSGE
ERLRMCVAVKKKLQLYYWKDREFHELQGDFGAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGANIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLAKMKDDSDGDKKQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPADYRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLEQSTKANSPLKGHERTVQYLQRLGVENLG
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAIPYLEHIIYVWD
DKGPEFHNVLIQLYLERVQGLMKQYLNSLPEGVPAVAAGKEEGDLGEFRNKLLSFLDIST
SYEPARLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHRHYDSLVE
GNKDVYLSLLRMYLSPPDVHCLGPIAMELSEPQANLQAALHVLELHHSKLNTTKAMNLLP
ANTQIREIRVFLESVLEEKAQRKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRNVCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcatatgaatcagtgcctattttggaaaagcttccccttcaaattgactgt
cttgctgcctgggaggactggctacttgtgggaacaaagccaggacatcttcttctctac
cgaataaagaaggatgcaggcaccaaccggtttgaggtaacactggaaaaatccaataag
aacttctccaagaagattcagcagctctacgttgtctcacagtacaaaatacttgtcagt
cttcttgaaaacaacatccacgtccatgacctcctgaccttccagcagatcactgtgttg
tccaaagccaaaggagccacgctcttcgcctgtgacttgcagcaaaccagctctggagag
gaaaggttgagaatgtgtgttgctgtaaaaaagaaactccagctgtattactggaaagat
agagagttccacgaactgcagggggacttcggtgctccagatattccaaagtccatggct
tggtgtgaaaactccatatgtgttggtttcaaaagagactattacctcattcggatggat
ggccgtggctccatcaaggagctcttccccactgggaaacagttggagcctctggttgcc
ccacttgctgatgggaaggtggcggttggtcaggatgacctaactgtagttctgaatgaa
gagggcgtttgcactcagaagtgtgccctgaattggacagacatccctatagcaatggag
caccagcctccatacatcatagctgttcttcctcggtacgtggagatccggaccttcgag
ccaaggctgctggtgcagagtgtggagctccagagacctcgcttcatcacttcagcaggg
gcaaatattgtgtacgttgccagcaaccactttgtgtggcgccttgtgcccgtgtcaata
gccagccagatccgacagcttcttcaggacaagcagtttgaactggctcttcagcttgcg
aagatgaaggatgactcagatggtgataagaagcagcagatacatcacatccagaatctc
tatgccttcaatctgttttgccagaagagatttgatgactccatgcaggtgtttgccaaa
ctcggcacagatcccacccatgtgattgggctatacccagacctgcttccagcagactac
cgcaaacagctgcactatcccaaccctctgcctactctgtccggggcagagctggagaag
gctcatcttgctctcatcgattacctcacccagaaacgcagccaccttgtgaaacagctg
aatgactctgacccttctacaacatctccactcatggagggcacgcccactattaaaagc
cgcaaaaaactcctgcagatcattgataccaccctgctgaaatgttacctacataccaac
gtggccctggtgtcccccctccttcgtctggagaacaaccattgccacatcgaggagagc
gagtacgtcctgaaaaaggcccataagtacagcgagctcattatcctctatgagaagaag
ggcctgcaccagaaagctctgcaggtgctgctggaacagtctaccaaggccaactctcca
ctaaagggccacgagcgaacagtgcagtacctccaaagactgggagtggagaatttggga
ataatctttgagttttctccctgggtgttgaagatctgtcctgaggatggcctgaagatt
ttcacagaggacctgacagaagtggaaactttgcccagagacaaggtgctgaacttcctg
aaggagggctttaaggagcttgccatcccatatttggagcacattatctatgtgtgggac
gataaaggcccggagtttcacaatgtgctgatccagctctacctggagagggttcaaggc
ctcatgaagcagtacctcaactcactgccagaaggagttccagctgttgctgcggggaag
gaggaaggtgatctgggagagttcaggaacaagctgctgtctttcctggatatttctacc
agctatgagccagccagactcatcagtgacttcccctttgatggcctgctggaggaacgg
gctctgcttctgggtcgcatgggtaaacacgagcaggcgctcttcatctacgtgcacatc
ctgaaagacactcgcatggctgaagaatactgtcaccggcattacgacagtttagttgaa
gggaataaagatgtttatctgtctctgctgcgaatgtacctgtcacctcctgacgtccac
tgcctggggcccatcgcgatggagctgtcggagcctcaagccaacctccaggcggccctg
cacgtcctggaactgcaccacagtaaactcaacaccaccaaggccatgaatctgctccca
gcaaacacccagatccgagagatccgggttttcctggagagcgtgctggaggagaaggcg
cagaggaaacgttgcaaccaggtgctgaagagtctgctgcaggctgagttcctgagggtg
caggaggagcgcattttccaccagcaggttaaatgtgtcattacagaggagaagacctgc
agagtctgcaagaagaaaataggaaacagtgcatttgccaggtatcccaacggcgtggtg
gtgcattatttctgctgcaaagaccgcaacgtgtgtcccactgagcagtaa
DBGET
integrated database retrieval system
