Micropterus salmoides (largemouth bass): 119910343
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Entry
119910343 CDS
T07309
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03015
mRNA surveillance pathway
msam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119910343 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
119910343 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119910343 (pabpc4)
03041 Spliceosome [BR:
msam03041
]
119910343 (pabpc4)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119910343 (pabpc4)
mRNA cycle factors
Stress granule specific factors
119910343 (pabpc4)
Spliceosome [BR:
msam03041
]
Complex C
Other components
Complex C specific factors
119910343 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RBD_RDR6
ApbA_C
POP1_C
Motif
Other DBs
NCBI-GeneID:
119910343
NCBI-ProteinID:
XP_038584830
LinkDB
All DBs
Position
Unknown
AA seq
628 aa
AA seq
DB search
MNTAATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
SQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAELGAKAKEFTNVYIKNFGDDMDDDRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYE
KHEDANKAVEDMNGTDLNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRT
TYYAPNQLAQMRPNPRWQQQGGRGQGGFQGIPGSLRQPGPRANLRHMSPNSSTQGPRAPG
QAMGPRPSMGVPGPRAMPPYKYATGVRNPNPQVVQPIALQQTQPAVHVQGQEPLTASMLA
AAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAV
AVLQAHQAKKDATQKVGTMATTTAAATS
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaacactgcagcgacggggagttatccgatggcttctctctacgttggcgacctgcac
cccgatatcacggaggctatgctgtatgagaaattcagcccagccggaccggtgctctcc
attcgggtatgccgagacatgatcacccggcgatccttgggatatgcttatgtgaacttc
tctcaacctgctgacgctgagcgagccttggacaccatgaacttcgacgtggtgaaaggg
aagccaatcagaatcatgtggtcccaaagagacccctccctcaggaagtctggagtgggc
aacgtgttcatcaagaaccttgacaagtctattgacaacaaagccctgtacgacaccttc
tctgcctttggcaacatcctctcctgcaaggtggtgtgtgacgaaaatggctccaaaggc
tacgcttttgtccactttgagacccaggatgctgctgaccgtgccattgagaagatgaac
ggcatgcttctgaatgaccgcaaggtgtttgtgggtcgtttcaaatctcgcaaggaacgg
gaggctgaacttggtgccaaagccaaagagtttaccaatgtctacattaagaactttggg
gatgatatggatgatgaccggctgaaggagcttttcgacaaatatggtaaaacactcagc
gtgaaggtgatgacagaccccactggcaaatccagaggctttggatttgttagttatgag
aaacacgaggacgctaacaaggctgtagaagacatgaatggcactgacctcaatggcaag
acagtgtttgtgggccgagctcagaagaagatggagcggcaggcggagctgaagaggaag
tttgagctgctgaaacaagaaaggatcagtcgttatcagggtgttaatctttacattaaa
aacctggatgacaccatagacgatgagaaactgcgtaaggagttctctccattcggatct
attacaagtgctaaggtgatgctagaggagggtcgctccaagggctttggctttgtctgc
ttctcctcccccgaagaggccaccaaggctgtgactgagatgaatggacgtattgttggc
tccaaacccctctacgtggctctcgctcagcgcaaagaagagcgcaaagcccatctaaca
aaccagtatatgcagcgtattgctggcatgagggccatgccggctaacgccatcatcaat
cagttccagcccactagtggctacttcatgccagctgtgccacaggcccagaataggacc
acatactatgcacccaatcagctggcccaaatgcgacccaaccccagatggcagcaacaa
ggtggcagaggtcaaggtggtttccaagggattcccggatcgctgcgtcagccaggaccc
cgtgccaacctgagacacatgagtcctaatagcagcacacagggaccgcgagctcctggc
caggccatgggtcctcgtccctcaatgggagtccctggcccccgtgccatgcctccatac
aaatatgccactggtgtccgtaacccaaacccccaggtggtgcagcctattgccttacag
cagactcagccagctgtgcatgtccagggccaagagcctctcacagcctccatgctggct
gctgcgccccctcaggagcagaaacagatgctaggtgagcgtcttttcccactgattcag
gcaatgcatgccaacctggcaggaaagatcactggcatgctgctggagattgacaactct
gaactgctccatatgctggagtctcatgaatctctgcgttcaaaggtcgaagaagccgtt
gctgtgctacaagcccatcaggcaaagaaagatgccacccagaaagtgggcaccatggct
actacaactgctgctgccacatcctga
DBGET
integrated database retrieval system
