Micropterus salmoides (largemouth bass): 119910410
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Entry
119910410 CDS
T07309
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119910410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msam03021
]
119910410
03019 Messenger RNA biogenesis [BR:
msam03019
]
119910410
Transcription machinery [BR:
msam03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119910410
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
119910410
U7-dependent histone pre-mRNA processing factors
119910410
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
DUF1611
Motif
Other DBs
NCBI-GeneID:
119910410
NCBI-ProteinID:
XP_038584954
LinkDB
All DBs
Position
Unknown
AA seq
690 aa
AA seq
DB search
MATKRKVEVIIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCVQGQRVSGILVKKNFNYHILNPSDLSTYTELAMSTVKQSQAIPFTGPYSLLVCHLRNL
TGDVEELDGTEKNTLKIFKTITLVHEVGMVLLEWIANPLNDMYADAVTTVVLEVQSNPKA
QKVMETQSSFMDMDVFQTRLGVMLQDMFGEECVDFRDGKNFTVTVDGKMVHICLETRSVC
YEDEGTEDDSLREMVELAVQRLYDALNPAI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaacgcaaagtagaggtgattattcccgcagaggaaagcgaccagctccta
atccgtccactgggtgctggtcaggaagtggggaggtcatgcatcatcttggagttcaaa
ggaaggaaaattatgctggactgtggtatccaccctggcttggagggaatggacgccctc
ccctatatagacttgatcgacccagctgagatagacctgcttctcatcagccatttccac
ttggatcactgtggagctctcccctggttcctccagaagaccagctttaaaggcaggacc
ttcatgacccacgccactaaagccatctaccgctggctactgtcagactacgtcaaagtc
agcaacatttctgcagatgacatgctgtacactgagacagacctggaggagagcatggat
aagattgagaccatcaacttccacgaggtcaaggaggtggccggaatcaagttctggtgc
taccacgctggtcatgtgctgggagctgccatgttcatgatcgaaatagctggagtcaag
ctgctgtacacaggagacttctcccgacaagaagacaggcatctgatggctgccgagatc
cccagtgtcaaacctgacatcttaatcatagagtcgacctacggcacccacatccatgaa
aagagggaggagcgtgaagctcggttctgtaacacagtccatgacattgtcaacagagaa
ggccgctgtttaatcccagtgttcgcgttgggacgagcccaggaactgctgctcatcctg
gatgagtactggcagaaccacccagagctccatgacatccccatctactatgcttcatcc
ctagccaagaagtgcatggccgtgtaccagacctacgtcaacgcaatgaacgacaagatc
cgcaaggccatcaatatcaacaatccttttgtcttcaagcacatcagtaacctcaagagc
atggatcactttgacgacattggtcccagcgttgtgatggcgtctccgggtatgatgcag
agcgggctctccagagagctctttgagagctggtgcactgataagaggaacggagtgatt
atcgctggatactgtgtagagggcacactggccaagcacatcatgtctgagccggaggag
atcaccaccatgtcgggacagaagctgcagctaaagatgtcagtggactacatctccttc
tccgcccacactgactaccagcagaccagcgagttcatcagggctctcaaaccaccacac
gtgatcctggtccacggggaacagaatgagatggctcgtctgaaggctgcattgatcagg
gagtatgaggataatgaccaggttcacattgaagtccacaaccctcgcaacacagaagct
gtcaccctcaacttcagaggagagaagctggccaaggtgatgggctctctggctgataag
aagtgtgtccagggccagagggtgtcaggcatactggtgaagaagaacttcaactaccac
atcctcaatccctctgacctttctacgtacacagagttggccatgagcactgtgaaacag
tcccaggccatccccttcaccggaccttactcactgctcgtctgccatctgaggaacctc
actggcgatgtggaagagctggatggaaccgagaagaacactttgaagatctttaaaact
atcactctggtccacgaggtcggcatggtgctgctagagtggatagctaaccctctcaac
gacatgtatgccgatgctgtcaccactgtagtgctggaagtgcagtcaaacccaaaggct
cagaaagtcatggagacccagagttcttttatggacatggacgtcttccaaacccgccta
ggagtcatgttgcaggacatgtttggagaggaatgtgtggatttccgtgatggtaaaaac
ttcactgtgacggtagatgggaagatggttcacatttgcttggaaacgaggtcggtgtgc
tacgaggatgaaggcacggaggacgactccctgagagagatggtggagctggcggtgcag
cggctctatgacgccctcaacccggccatctga
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