Micropterus salmoides (largemouth bass): 119911372
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Entry
119911372 CDS
T07309
Symbol
sox17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
119911372 (sox17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msam03000
]
119911372 (sox17)
Transcription factors [BR:
msam03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
119911372 (sox17)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
119911372
NCBI-ProteinID:
XP_038586187
LinkDB
All DBs
Position
Unknown
AA seq
400 aa
AA seq
DB search
MSSPDAGYASDDQTQARCTMSVMMPGMGHCQWADPLSPLGDTKVKNEPCVSGSGSQNRGK
NEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVTEKQPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLDSSFLVHGVSEHQASSMSGDSRVCVESLGLGY
HEHGFQLPPQPLSHYRDAQALGGPSFETYSLPTPDTSPLDAVESDSMFFSPHSQEDCHMM
PAYSYHSQAAEYQPQDPLSNHHSNPILHRHPASAQEQPHQSATLPPSYMGCPNPLAMYYT
QHCSPSHPKRHPGGAGQLSPPPDSHSHSADSVEQMHHSELLAEVDRSEFEQYLSSSSARA
DMTGLAYGPHEAGMQGPESLISSVLSDASTAVYYCSYNNS
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcccgatgcgggttacgccagcgacgatcagacccaggcaaggtgtacgatg
tcagtcatgatgcctggaatgggacactgtcagtgggccgaccctctcagtcctcttggg
gacaccaaagttaaaaacgagccgtgcgtctccggctccggcagccagaatcgcggaaag
aacgagccgcggatccgacggcccatgaacgcgtttatggtgtgggcgaaggatgagcgc
aagagactggcgcagcaaaacccggacctgcacaacgcggagctgagcaaaatgctgggg
aaatcatggaaagcccttcctgtcacagaaaagcagccctttgtggaggaggccgagcgg
ctgcgggttcagcacatgcaggatcaccccaactataagtaccggccccggcggcggaag
caggtgaagaggattaagaggctggactctagctttctagtgcacggcgtgtccgagcac
caggcctcgtcaatgtccggggacagcagagtgtgtgtggagagtctcggcctgggctac
cacgaacatggcttccagcttcctccacagccgctcagccactaccgagatgctcaggct
cttgggggcccctcctttgaaacctacagcctccctacgcctgacacctctcccctggac
gctgtagagtcagactccatgttcttctctcctcattcacaagaggactgccacatgatg
cctgcatactcgtaccactcccaggctgcagagtaccagccccaggaccccctctcaaac
caccacagcaaccccatcctgcaccgacaccctgcctcagctcaagagcagccccatcag
tctgccacccttcccccttcctacatgggatgccccaaccctctggccatgtattacacc
cagcattgcagtcccagccaccccaagcggcatcctggtggggcaggacagctctccccc
cctcctgactcccattctcactcagcagacagcgtggagcagatgcaccactctgagctg
ctggctgaggtggaccgcagcgagttcgagcagtatttgagttcctcttcagcacgtgcg
gacatgacaggcttggcgtacgggccacacgaggccggcatgcaaggacctgaaagcctc
atatcatcagtgctgtcagacgccagcacagctgtgtattactgtagctacaacaactcc
taa
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