Micropterus salmoides (largemouth bass): 119911864
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Entry
119911864 CDS
T07309
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04382
Cornified envelope formation
msam04510
Focal adhesion
msam04512
ECM-receptor interaction
msam04518
Integrin signaling
msam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119911864 (col4a5)
04518 Integrin signaling
119911864 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119911864 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119911864 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119911864 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msam04147
]
119911864 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
msam00536
]
119911864 (col4a5)
Exosome [BR:
msam04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119911864 (col4a5)
Glycosaminoglycan binding proteins [BR:
msam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119911864 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119911864
NCBI-ProteinID:
XP_038586766
LinkDB
All DBs
Position
Unknown
AA seq
1683 aa
AA seq
DB search
MNKDLKIAVPVLFLALCVAVQRSDSAACHGCAGSKCDCSGVKGAKGERGFPGLTGQPGVP
GFPGPEGPIGPRGEKGSDGPQGQFGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPGPRGVP
GCNGTKGERGFPGLSVPGQQGLQGPPGLPGPKGDPGDVISTNRFGDKGAVGLPGLPGAPG
PSGPPGLQGPQGPPGARGYEGRPGPPGLPGPKGNMGLNFQGPKGEKGEPGLPGPPGPPGQ
VGEQKRPPETEIQRGDKGDPGLPGPMGDPGYPGPPGPSGGQKGDKGEPGDPGKRGKPGKD
GDPGPPGFPGIKGEPGLPGPAGRDGERGMKGDRGYPGPPGLVIGGQTGGRVGPKGEPGYP
GAPGVKGERGPPGLSGPPGTPGLPAIGGSGPPGPPGFPGERGQKGDSGAPGLSLPGPPGR
PGTPGSPGQPGPPGPPGYSTGGTNCIVGEPGLPGLQGERGYPGETGEKGEKGDTCVNCFG
SSNPIPGPPGPPGQPGFPGSPGAQGIKGDRGFQGTPGAVGPPGSPGPQGAPGFPGEKGDP
GDAIIVDGVRGEKGDTGFPGQPGLPGLDGRPGRDGQPGSPGPKGAPGSLLVKGERGPPGE
PGPQGIPGDRGPPGPPGFGPQGSPGEKGVQGVSGRPGGPGIPGAKGEPGLSVAEKGLPGP
RGQDGEPGRPGSPGSPGPPGQNGFPGLPGAKGDPGLPGIGLPGPPGAKGFPGVAGQPGAP
AAPGRPGVDGLPGQPGLPGPKGEPGFGLPGPPGLPGVPGAKGFPGPKGDSGFPGGSGSPG
RSGFDGAPGAKGEPGIPGNPGARGPPGPTINGPLGQPGPPGPPGPMGPPGEKGFPGSNGE
KGDPGPPGLDIPGLPGDRGSPGFPGSPGPIGTPGPPGGPGRDGLPGLPGQKGDMGPMGSP
GPSGGPGAPGLPGAVGFKGEPGFPGRDGGPGRPGAKGDKGEAGLQGPPGEQRIVEAIKGD
PGLPGSPGLPGQKGIAGLSGDPGLPGSDGRPGLPGPPGPKGDPGIPGSPGAPGSPGLKGS
MGEMGFPGPSGQKGQIGQPGRSGTPGQPGGPGFPGAKGEPGSAGVGPPGQTGPKGEPGQP
GFPGSPGLKGTPGSPGLPGLPGGPGTKGDPGLPGFQGSPGIPGPKGLDGGPGAPGLTGAP
GRPGESGRPGGPGLPGEKGQAGRDGIPGPAGVKGEPGPPGYGGPGPAGLPGLPGTKGDPG
LPGPPGSPGFSGIKGDVGFPGPPGPAGNSGPPGPPGLALQGPKGLQGPPGPPGRAGPPGP
PGAPGPEGPRGPAGSGGVKGEKGIPGSPGQPGFPGQKGDVGVPGFPGPSGLPGGTGMKGD
IGLPGVPGFPGPKGDPGLPGAIGLPGDPGDFGIPGPPGDPGIAPPPLVVKGERGPPGPPG
QSGGRGPPGLPGREGLPGQPGDPGEPGAEGPPGFSGPPGRKGDSGPAGQPGQPGFTGPPG
SDGPQGPPGLPGSVSAAHGFLITRHSQGQDVPICPPGTNVIYDGYSLLYVQGNERAHGQD
LGSAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGESIKPYIS
RCSVCEAPAMVIAIHSQTITIPSCPSNWETLWIGYSFMMHTSAGAEGSGQALASPGSCLE
EFRSAPFIECHGRGTCNYYGNSYSFWLATVEKNEMFRKPQSETLKAGNLRTRVSRCVVCM
KRT
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacttgaagatcgccgtgcctgtgctcttcctcgccctgtgcgtcgcggtg
cagcgatccgactctgcggcttgccatggatgtgcgggatccaaatgtgactgcagtgga
gtaaaaggagccaagggtgagcggggttttccaggtctcacgggacagccaggagtacca
ggattccccggaccggaagggccgatcggacccagaggagagaagggtagcgatggacct
caaggacagtttggcccaaaaggaataagaggcccttctggattgccaggatttccagga
acaccaggacttccaggtctgcccgggcaggatggacctccaggcccgagaggagtgccg
ggttgcaacgggacaaagggtgagaggggtttcccaggactttcagtccccggacagcaa
ggactccagggtccacctggtctgccaggaccaaagggagacccaggcgacgtgatctcc
accaaccgttttggagataaaggagcagtgggattgcctggattgccaggagctccaggc
ccttctggaccccccggattgcaaggtccgcagggccctccaggagccagaggctatgag
ggtcgtccaggtcctcccggtcttcctgggccaaagggaaacatgggattgaatttccaa
ggacccaaaggagagaagggtgagccaggtttgccaggacctccaggtcctccagggcaa
gttggagagcagaaaaggccacctgagacagagattcagagaggagacaagggggaccca
ggtcttccaggtcccatgggtgatccaggctatccaggacctcctggtccctcgggtgga
cagaaaggagacaagggagaaccaggagatccaggcaaacgaggcaaaccaggcaaagac
ggtgaccctggccctccaggcttccccggtatcaaaggagaaccaggcctgcccggtcct
gctggcagggatggagagagaggaatgaaaggtgaccgtggatacccgggaccaccagga
ttggtgatcggtggacagacgggaggtcgggtcggtcctaaaggtgagcccgggtacccc
ggagcacctggagtcaaaggagagagaggaccaccaggtttatcaggacctccaggaact
ccaggacttccagctattggtggcagtggtccacctggacctccaggcttccctggagag
agaggtcagaagggagactctggcgctccagggctgtctttgccaggacccccaggacgt
ccgggaactcctggttccccgggtcaaccagggcctcctggacctccaggctattccaca
ggaggaacaaactgcatcgtcggggagcccgggcttcccggcttgcagggagagagaggt
tacccaggagagacgggcgagaaaggtgagaagggtgacacctgtgtgaactgctttggc
agctccaaccccatcccaggacccccaggacctccaggacagccaggattccctggatct
cctggagctcaaggtatcaaaggagacagaggatttcaaggaacacccggtgctgttgga
cctcctggttcccccggtcctcagggtgctccaggattccccggagagaagggagaccca
ggcgatgccatcatagttgacggtgtgaggggagagaagggtgacaccggtttccctgga
caacctggtctgcccggtctggacggtcgacccggtcgtgatggacagcctggatctcct
ggacccaaaggagctcctggctctctgctggtaaaaggagaacgagggccccccggtgag
cctggcccccaaggtattcccggagacaggggtcccccaggaccccctggcttcggacct
cagggatctccaggagaaaaaggtgtccagggtgtctcaggaagacccggaggtcccggc
atacccggtgctaaaggtgaaccaggcctatcagtggctgagaaaggcttaccaggaccc
agaggacaggacggcgagccaggacggcccggctcaccaggtagcccaggtccccccgga
cagaatggtttccctggtttaccaggagcgaagggtgaccctggactcccaggtatcgga
cttccaggacccccaggagctaaaggattcccaggtgttgccggccagccaggagctcct
gcagcaccaggcagaccaggagtagatggactccctggccagcctggacttcctggaccc
aagggcgagcctggctttggtcttcctggcccccccggtttaccaggagtacctggagct
aaaggtttccccggaccaaagggagattctggtttccctggcggctccggttcacctgga
cgatctggatttgatggcgctccaggagctaaaggcgagcctggtatacctggtaatccc
ggagctcgtggcccacctggacccaccatcaacggcccactggggcaacccggaccacct
ggaccgcctggaccaatgggaccaccaggcgagaaaggattccctggatcaaacggagag
aagggagacccaggccctccaggtctagatatcccaggtctgccgggagacagaggaagt
cccggtttcccaggttccccgggaccaatcggaaccccaggacctcctggaggacctgga
cgagatggcctgcctggactgccaggtcaaaaaggagacatgggtcccatgggctcacca
ggaccttctggaggaccaggagctccaggattacctggcgctgttggatttaaaggtgaa
cctggattcccaggcagagatggtggacccggtcgtcccggagctaaaggagacaaaggc
gaagccggtctccagggaccacctggagagcaacggatcgtggaggcaatcaaaggagat
cctggactaccaggttcaccaggtcttccaggtcagaaaggcatcgctggtctctccgga
gaccccgggctgccaggatcagatggacgccctggactccccggaccaccaggtcctaaa
ggagatcctggtatcccaggaagcccaggtgctcctggaagtcctggcctaaaaggttcc
atgggagaaatgggatttccaggaccgtcagggcagaagggtcaaataggtcaaccaggt
aggtctggaaccccgggacagccaggaggacctggtttccctggagccaaaggcgaacca
ggctctgctggagttggaccacctggacaaactggacccaagggtgaaccaggccagcca
gggttcccaggaagtccaggactgaaaggaactccaggatcaccaggtctcccaggttta
ccaggagggccaggtactaaaggcgaccccggcctccctggattccaaggttctcccggt
atccctggtcccaagggtctcgacggtgggcccggtgccccaggtctcactggagctccc
ggtagaccaggagagtccggccgaccaggaggaccagggttgccaggagagaagggtcag
gcaggacgggacgggattccgggaccggctggagtcaaaggagagccagggcctcctggt
tatggtggtcccggtcccgctgggcttccaggtttgccaggtacaaagggagacccaggt
cttcctggtccacctggcagtcctggtttctcaggcattaaaggagatgttggtttcccc
ggcccccctggtcctgcaggcaacagcggtcctcctgggcccccaggactggctctgcag
ggccccaaaggactccaaggaccccctggaccccctggaagagcaggtcccccaggtcct
ccaggtgcacctggcccagagggtcctcgtgggcccgcgggaagtggaggcgtgaaggga
gagaagggcattcccggttctcctggtcagccaggcttccccggacagaagggagatgtt
ggtgttcccggcttcccaggtccctctggtcttcccggtggcactggtatgaagggagat
atcggtctgcctggcgttcccggattccctggaccaaagggagacccaggactccccggt
gccattggccttcctggagatcctggagatttcggaatcccgggccctcctggtgaccct
ggtatagctccgcctcccctcgtggtgaagggagaacgaggaccccctggtcctccgggc
cagtctggtggtcgtggaccacctggccttcctgggcgtgagggacttccaggtcaacct
ggtgaccctggggaacctggtgcggagggtcctcctggtttcagcggcccacctggcagg
aagggagacagcggacctgccggtcagcctggtcaaccaggcttcaccggtccccctggt
tcagacggtccacaggggcctcctggtcttccaggatcagtctctgcagcccatggcttc
ctcatcaccagacacagccaaggacaggatgtgcctatttgtccccctggaactaacgtg
atctacgatggctactcgttgctgtatgtgcagggcaacgagagggcacacggacaggac
cttggctcggccggcagctgtctgcgcaggttcagcaccatgcccttcatgttctgcaac
atcaacaacgtctgcaattttgcctcccgtaatgactactcctactggctgtcaacacca
gaacccatgcccatgtccatggctcccatcactggagagagcatcaagccttacatcagc
aggtgttcagtatgtgaagcgccagccatggtgattgcaatccacagtcaaaccatcacg
attccctcttgcccttcgaattgggaaactctgtggataggatactccttcatgatgcac
actagcgcgggtgcggagggctccggtcaggccctggcctcccccggctcctgcctggag
gagttccgcagcgctcccttcatagagtgccacggcagagggacgtgcaactactacggc
aactcttacagcttctggctggccactgttgaaaagaatgagatgttcaggaagccccag
tcggagactctgaaggcgggtaacctacggacacgcgtcagccgttgcgtagtctgcatg
aagaggacgtaa
DBGET
integrated database retrieval system
