Micropterus salmoides (largemouth bass): 119912490
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Entry
119912490 CDS
T07309
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04382
Cornified envelope formation
msam04510
Focal adhesion
msam04512
ECM-receptor interaction
msam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119912490 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119912490 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119912490 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119912490 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msam04147
]
119912490 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
msam00536
]
119912490 (col4a6)
Exosome [BR:
msam04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119912490 (col4a6)
Glycosaminoglycan binding proteins [BR:
msam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119912490 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119912490
NCBI-ProteinID:
XP_038587629
LinkDB
All DBs
Position
Unknown
AA seq
1709 aa
AA seq
DB search
MKFLICVIAVALAVRSTHGGSKSDEPCGGLDCSGGCRCNPEKGSRGRPGPVGEVGVSGPE
GPPGSPGPQGPKGEKGHIGLKGPPGQKGDKGPMGVPGFQGNDGVPGHPGQEGGRGPPGLD
GCNGTRGDPGPPGFRSGVPGFPGLAGPTGPKGQKGEPRYIDNSITSLPGLPGRDGPPGIR
GPYGPTGFPGPNGPEGFPGPPGPPGPPGPMGSRSDGYQGERGDKGDVGSPGDPGQPMING
VVEFVGFPKGDKGMQGEPGPKGFRGFPGNPGLPGPFGYRGELGEKGIPGYPGGRGPPGFN
GPPGTPGQQGSPGNSGFPGQPGYIGPKGDQGEQGLPGPPAYTSNGDTSVQGAPGDPGLDG
LPGAPGDPGASGYPGSPGQPGIVEFGRNGPPGFPGNSGQKGEKGNAGIQGYGSEGSPGSP
GPPGPPGPPGPQGPSSIAVGPCIIYPDVSPRPKGSSPDVPVSYRGEPGTPGPRGVPGSRG
YKGFRGDLGDCNCLGGGSPNLPGLPGPPGSNGSPGFLGRKGEPGDPGSPGFGGVQGPPGR
AGDRGFFGRKGEKGTSYYPTLGLGVKGELGAPGPRGPTGETGKNGRDGLPGFPGIPGPPG
DAGFGTVGEKGFPGFPGPKGRSGGPGEPGVGYVGTPGFRGEPGNPGIPGLPGQPGLPGPK
GENSCGGVNDAGEGTGQLLPCIVREDGDPGLSGLPGQPGPKGQPGFPGIPGRAGFDGAKG
ERGDPGFGGQPGPQGFPGPRGDPGLRGVPGQSFDGVRGKDGVPGRPGAKGQPGEVLGATP
GRPGQDGLPGAPGDKGQPGTPGGPGLPGVDGRFGVPGLKGESGVNGNPGVTGPPGPPSDR
PGIPGRPGAPGNQGLSGSPGFPGRKGERGDPGFPGPAGMKGTPGLPGTTGSPGPRGPPGL
PGPGTREGVPGIPGRKGERGLPGLMGFPGLPGRTGSPGFLGGKGLAGEPGRDGFPGGSGF
SGQKGERGETGPRGPPSPFVSFEIVEKGQPGTPGTNGFPGFSGPRGDKGLPGLPGRQGVP
GLPGFPEQSKGQPGEPGFSGRPGASGFPGSKGEPGIMGFPGMTGPRGDDGAPGFPGNPGE
FGRPGSKGQPGETFGYPGAPGAKGQPGDSGFPGRRGNDGAPGDSGFPGGPGFPGAKGAIG
EGGRPGIMGSPGFPGPKGQPGYPGRRGQDGPSGQNGNPGGPGAIGLPGSPGLDGLNGLAG
PKGIPGNPGVSLGGAPGSPGISGLKGERGVSYPGSPGFPGPKGERGDLGPPGLTGFPGRP
GPPGRPVGSNIPGPVGDPGLPGLDGEYGFQGPPGPPGPPGPGTIQGDRGDAGLPGFPGSP
GRKGEPGGNGGTGFPGSPGLKGGRGDTGYSGGPGRKGFPGDSGYYGNKGVKGPRGSPGRK
GLPGVSNPPLPPDPATRGDPGFPGRSGTLAAPGEPGQPGLPGRPGPKGRPGPVGKLGRTG
PSGLPGPIGDPGPPGFLGPTGNQGSPGAVGRPGNPGSTGRSQGIGYTLVTHSQDSQVPMC
PQGMAKLWDGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEICYYASRNDKS
YWLSTTASIPMMPVADGQIRPYISRCSVCEAPSLAVAVHSQDTTIPNCPPGWRSLWIGYS
FLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVDPNKE
FVYSPEQETLKEGEERSKVSRCQVCSKLL
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgatttgtgtgatagcagtcgccctggcggtgagatccacgcacggaggt
agcaagtctgacgagccgtgtggaggcctggactgtagcggaggatgcaggtgcaaccca
gagaaaggcagtaggggtcgtccagggcctgtcggtgaagttggtgtgagtggaccggaa
gggccacctgggtccccagggcctcaagggcctaaaggagagaagggtcatattggattg
aaaggaccacctggccagaaaggagacaaggggcctatgggcgtgccagggttccaagga
aatgatggagtacctggtcaccccggtcaagagggtggcagaggaccaccgggactggac
ggctgtaacgggaccagaggagatcctggaccacctggcttcaggtcaggagtacctggc
ttccctggacttgctggacctactgggccaaagggtcagaaaggagagcctcgatatatc
gataacagcatcacgagtttaccaggtttaccaggaagggacggtccacctggtatcagg
ggtccttatggtccaactggttttcctggtcccaatgggccggaaggattccctggccca
cctggtcctcccggtcccccagggccaatggggagccgtagtgacggatatcaaggagag
cgaggagacaagggcgacgtgggctcacccggtgaccctggccagccaatgatcaatggc
gttgtggagtttgtgggttttcccaaaggagacaaaggaatgcagggtgaacctggtcca
aagggattcagaggattccctggcaatcccggactacctggaccttttggttatcgaggt
gaacttggcgagaaaggcattcctggataccccgggggaagaggtcctcctggttttaac
gggcctcctggtactccaggacaacagggatcccctggtaactcaggtttccccgggcag
ccaggatacataggaccaaagggcgaccagggagaacagggactaccaggacctcctgct
tacactagtaatggggacacttctgttcaaggagcaccaggtgacccaggtctcgatggc
ctgcccggtgcccccggtgaccctggagcttcaggatacccaggatcaccaggacaacca
ggaattgttgagtttggtcgtaacggaccgccaggtttccccgggaactctggccaaaag
ggagagaaaggtaacgctggcatacaaggctacggctccgaaggatcccccggctcccct
ggacctcccggaccccccggccctcctggacctcagggcccttctagcattgccgttggt
ccctgcatcatctatcctgatgtgtcccccaggcccaaaggttcttccccagatgtcccc
gttagttaccgtggagagcctgggacccctggccccagaggagtgccgggtagtagagga
tacaaaggtttcagaggtgatcttggcgactgtaactgcctaggaggaggctccccaaac
ttgcctgggttacctggacctccaggatccaacggcagccccggcttcctagggcgaaag
ggagaacccggtgaccccggttcacccggctttggtggtgttcagggacctcctggtcgt
gctggtgacaggggtttctttggtcgtaagggagagaaggggacgtcttactaccccacc
cttggtctgggggttaaaggggaacttggagctcctggacccagaggacctacaggtgaa
actggaaaaaatgggagagacggactgcctggctttcccgggatccctggacccccagga
gacgctggtttcggcacagttggagagaaaggtttcccagggttcccagggcctaagggt
cgttccggtggccctggcgagccaggagttggctacgtcggaacgcctggttttcgcgga
gaacctggaaatcccggtatacctgggttgccggggcaaccaggtttacctggaccgaaa
ggtgaaaacagctgtggaggggttaatgacgctggagagggaaccggccaactgctaccg
tgcatcgtccgtgaggacggagaccccgggttatctggtttacctggacaaccaggtcct
aaaggtcagccaggtttcccaggaatccctgggcgtgcagggtttgacggagccaaagga
gagcgaggagaccccggttttggaggccagcctggaccacaaggtttccctggacccaga
ggagaccctggacttcgaggtgttccaggacagagctttgacggagtcagggggaaggat
ggtgttccagggcgtcctggagccaagggccagcctggagaggtactgggagccacacct
ggaagaccaggacaggacggtttaccaggggcaccgggagacaagggccagcccgggaca
ccaggaggacctggattacctggtgttgatggacgtttcggtgttcctggactgaaggga
gagagcggagtcaacggtaatcctggtgttaccggccctcctggacctccatctgatcgg
cctggcattcccggtcggcctggagctcctggcaaccagggactgagcggatcaccaggt
ttccctggtcgcaagggagaaagaggagacccaggtttcccggggcctgctggaatgaag
ggaaccccaggactgcctggcaccactggatcaccagggcctagaggccctcctggactt
ccaggaccgggaacaagagagggagtcccaggaatcccaggaaggaagggtgagagaggt
ttgccaggactaatgggttttccaggactaccaggtcgtactggaagcccagggtttctt
ggagggaaaggactggctggagagcctggaagagacggattcccaggcggatctggattc
tccggccagaaaggtgagagaggagaaaccggtccccgcggcccgccttctccttttgtt
tcctttgaaattgtggagaaaggacaacccggaactcccggaaccaacggctttcctggc
ttctccggacccagaggtgacaaaggtctgccgggtctgcctggtaggcagggtgtgcct
ggacttcctggtttccccgagcaaagtaaaggacagccgggagagcctgggttttctgga
cgaccaggagcttcaggcttcccagggtcaaagggggaacctggaatcatgggattcccc
ggcatgactggaccaaggggtgatgatggtgcacctggtttccctggcaatcctggagaa
tttggtcggcctggtagcaaaggtcaacccggagagacgtttggttatcctggagctcca
ggagctaaaggccagccaggagattccggcttcccaggtcgtcgtggcaatgatggcgcc
cccggtgacagcggctttccggggggtccaggtttccctggagcgaagggggctattggt
gaaggaggacgtcctggaataatgggctcccctggtttcccagggccaaagggccagccc
ggctatccaggaagaagaggacaggatgggccgtctggtcagaatggaaatcctggaggt
cctggagccataggtttgcctggatcccctggtctggatggacttaatggccttgctgga
cctaaaggcatccctggaaacccaggtgtgagcttaggaggtgccccaggctctcctggt
atttcagggctgaagggagagcgaggcgtctcttacccaggaagcccaggcttcccagga
ccgaagggagagagaggagatttgggtcctcctggactcacagggttccctggtcggcct
ggacctcctggtcgccctgtggggtcaaatattcccggacctgtgggagaccctggcctc
cctggactggatggagagtatggttttcaaggtcctccaggtccccccgggccgcctggt
ccagggacaatccagggagacagaggtgacgccgggctcccaggcttccctggctccccc
ggcaggaaaggagaaccaggaggcaatggaggcaccggattccccggcagcccagggttg
aaaggaggacgaggtgatactggctacagtggaggtcctggtcgcaagggtttccctggt
gactctggttattatggaaacaaaggagtcaagggaccacgaggatctcctggtcgtaag
ggtctccctggagtctcgaatcccccacttccaccagatcctgcaacccgcggagacccg
ggctttcccggtcgaagtggaacccttgctgcccctggagagcccggtcagcctggactg
cctggacgtccaggtcctaagggtcgccctggccctgtgggtaaacttggcaggactggc
ccttctggtctgcccggacccatcggggaccccggacccccagggttccttggacccact
ggaaatcaaggttcccctggtgcagtcggtcgtcccggcaatcccggcagcaccggccgc
agtcaaggcatcggctacactctggtgacgcacagccaggactcccaggtccccatgtgt
cctcagggcatggccaagctgtgggacggatacagtctgctgtacgtggagggacaggaa
aaggcacacaaccaggatctcggtcagccaggttcgtgcctccccaggttcagcaccatc
cccttcctctactgctcccctaacgagatctgctactacgccagccgcaacgacaaatcc
tattggctctccacaactgcatccatacccatgatgcctgtggccgacgggcagatacga
ccttacatcagcaggtgttctgtgtgtgaggctccatctctggccgtggcagtccacagc
caggacacgaccatccccaactgtccacccggctggaggagtctctggataggatactcc
ttcctcatgcacacagcagctggcgctgagggcggtggtcagtccctggtgtctcccggc
tcctgcttggaggatttccgtgcaacgccattcattgagtgcaacggggccaagggcacc
tgccactacttcgccaataagtacagcttctggctcaccactgtggatcccaacaaggag
tttgtgtattcaccagaacaggagaccttgaaggaaggagaggagcgctccaaagtcagc
cgctgtcaagtctgcagcaagctcttgtag
DBGET
integrated database retrieval system
