Micropterus salmoides (largemouth bass): 119912906
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Entry
119912906 CDS
T07309
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03018
RNA degradation
msam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119912906 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
119912906 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119912906 (lsm5)
03041 Spliceosome [BR:
msam03041
]
119912906 (lsm5)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119912906 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
119912906 (lsm5)
Spliceosome [BR:
msam03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
119912906 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
119912906
NCBI-ProteinID:
XP_038588108
LinkDB
All DBs
Position
Unknown
AA seq
91 aa
AA seq
DB search
MAATPTTNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggctactccgacgacaaacccgtcacagttgctcccgcttgagcttgtggacaaa
tgtatcggctcccgaattcacatcgtcatgaaaaccgacaaagaaatcgtcggcaccctg
ctgggtttcgatgactttgtcaacatggtcctggaagatgtgacagaatttgaaatcact
ccagagggaaggaggataaccaaactggaccagatcctcctcaacggcaacaacatcacc
atgctcatacctggaggagaaggtcctgaagtatga
DBGET
integrated database retrieval system
