Micropterus salmoides (largemouth bass): 119914236
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Entry
119914236 CDS
T07309
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msam03009
]
119914236 (ddx56)
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119914236 (ddx56)
Ribosome biogenesis [BR:
msam03009
]
Eukaryotic type
Pre-60S particles
Helicases
119914236 (ddx56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Phage_YunG-like
Motif
Other DBs
NCBI-GeneID:
119914236
NCBI-ProteinID:
XP_038589322
LinkDB
All DBs
Position
Unknown
AA seq
562 aa
AA seq
DB search
MAAERLQFHEMGLDDRLLKAVADLGWSQPTLIQEKAVPLALEGKDLLARARTGSGKTAAY
AIPVIQRVLASKQSVREQDVRALILVPTKELGQQVQTMIRQLTAYCSRDVRVADISGKAD
LSAQRPILMEKPDVVVGTPSRALAHLNAQNLVLHSSLETLVVDEADLLFSFGFEADLKNL
LCHLPKIYQSFLMSATLTEDVQALKELLLHNPVILKLQGSQLPDSSQLQQYSIKCEEEDK
FLLIYTLLRLRLVQGKTLVFVGAVERCYRLKLFLEQFGIPACVLNSELPVQSRSHIITQF
NQGFYDYIIATDETSLADPTAAPQTTAGKGKKKKTAEKGGKTKDKEYGVSRGVDFQNVAN
VINFDFPASVESYIHRVGRTARADNPGTALSFISHTELGLLSEVEEALAGDHAESVLKPY
EFKMEEIEGFRYRCRDAMRSVTKQAVREARLKEIKQELLNSEKLKTYFDDNPRDLQLLRH
DKDLHPAVVKPHLRNVPEYLIPETLRGAVNPLLSSRRRKRKEKAKPEGVVKSSFKKNIQG
KNPLKSFRYTGGRNRKGKAGRS
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgagaggcttcagtttcatgaaatgggcttagacgaccgtcttttaaaggcg
gttgcagatctgggttggtcccagcccactctgatccaggagaaggccgtccctctggcc
ctggaggggaaagacctgctggctcgagcccggaccggctccggaaagactgcagcttat
gccatacctgtgatccagcgcgtcctggcctccaaacagagcgttcgtgagcaggacgtg
agagctctgatcctggtaccaaccaaggagctgggtcagcaggttcagaccatgatcaga
cagttgacggcgtactgctccagggacgtccgggtggccgacatctccgggaaagcggac
ctgtctgcgcagaggcccatcttaatggagaagcctgacgtggtcgtggggacgccgtcc
cgtgcgctcgcccacctcaacgcccagaacctggtcctgcattcgtccctggagacgctg
gtcgtagatgaggccgacctgctcttctcctttggcttcgaggcggacctgaagaacttg
ttgtgtcacctgccgaagatctaccagtcgttcctgatgtctgcgactctcactgaggat
gttcaggccttaaaggagctgctgctacacaaccctgtgatcctgaagctccagggctct
cagctccccgacagcagccagctgcagcagtacagcattaaatgcgaggaggaggacaag
ttcctgctcatctacacgctgctgaggctgcggctggttcagggcaagacgctggtgttc
gtgggagcggtggagcgatgctacagactcaaactgttcctggaacagtttgggattcct
gcctgcgtgctgaactcggagctgcccgtccagtccaggagtcacatcatcactcagttt
aatcaggggttttacgactacatcatcgccacagacgaaaccagcctggccgaccccact
gctgctccgcagacgactgcaggcaaagggaagaagaaaaagaccgcagagaaaggagga
aagactaaggacaaggagtacggcgtctccagaggtgtggacttccaaaacgttgccaat
gtcatcaactttgatttccccgcgtctgtagaatcatacattcatcgagttggaagaacg
gcgcgagcagacaaccccggcacggctctgtccttcatctctcacactgagctgggtttg
ctgtcggaggtggaggaggccctcgcaggagatcacgctgaatctgttctgaaaccttat
gagtttaagatggaagagattgaaggcttcaggtacaggtgcagggatgcgatgcgttca
gtgaccaagcaggcggtcagggaggcccggctgaaagagatcaaacaggagctgctcaat
tcagaaaaactgaagacatattttgacgataaccccagagatctgcagctgctcagacac
gacaaagacctgcatcctgctgtcgtcaagccccacctgaggaacgtgcccgagtacctc
attcctgagaccctgaggggcgccgtgaatccgctgttaagcagcaggaggaggaagagg
aaggaaaaagccaagccggaaggagtcgtcaagagcagcttcaagaagaacatccagggg
aagaacccgctgaagagtttccgatacaccggagggaggaacagaaaaggcaaagcaggc
cggtcatag
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