Micropterus salmoides (largemouth bass): 119914323
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Entry
119914323 CDS
T07309
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msam03041
]
119914323
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119914323
Spliceosome [BR:
msam03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
119914323
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
HA2_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
ATPase
Ank
nSTAND3
Ank_5
PhoH
AAA_22
AAA_7
Ank_3
AAA_23
SRP54
AAA_30
AAA_25
T2SSE
Motif
Other DBs
NCBI-GeneID:
119914323
NCBI-ProteinID:
XP_038589485
LinkDB
All DBs
Position
Unknown
AA seq
1394 aa
AA seq
DB search
MSNAGTTSRKPSRSQHTPPRGSISNGLKDIHIDEEVKIAVNLSLERFRYSDQKEMEFPSS
LGSTERAFIHRMAQSLGYISKSKGKGPNRFLTIKKRDGSDKPRPTMPLTLSHNSLYLIRS
LLQRFPVSNKERIDLQPNSKSGMSMAAEPDNSCDRNRASGRLNNGIPMVPRRRSPSELDS
FRRSLPVHERQEEIIQLIRENKVVLVVGETGSGKTTQIPQFLLDECSRNGEPCRIFCTQP
RRLAAIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLTFCTSGVFLRTLMAGDASLT
TVTHVIVDEVHERDGLTDFLLTKMRDVLQKIPTLKLILASAALDIDLFLQYFGSCPVIHL
KGRQFEVKELFLEDILRLTGFNNKDMRKYKEETQRKEKKQKRLTEWCKAVENNSVEEEQR
TPVSAPRFLQDSSSLDRGNEDGTEQLEPWLVKEMDSCISNIFLYEDQDAFIQIFNLILYE
GVNVDYRHSETGATPLMVAAGRGFLTQMEQLLNMGADINVKACNGWTALDFAKDFQQTDA
MDLLKSSIPLGDVSSLGESTLVQCGGVELSAEEQELLKLYHHSFDDEYVDLDLIMDLLHN
ICSTSSDGAVLIFLPGYDEIVALRDRILYDDKRFSTHSERYQVFTLHSDMQTLDQKKAMK
TSPPGVRKIILSTNIAETSITINDVVFVIDSGKVKEKSFDTLSHVSMLKTVWISKASALQ
RKGRAGRCRPGICFHLFSRLRFKNMLEFQVPQLLRMPLQELCLQTKLLAPSSCPVAEFLS
KAPQPPPAHVIRNAVQMLKTIDAMDQNEDLTDLGYHLADLPVEPHLGKMVLCAVVLKCLD
PILTIACTLAYRDPFVLPAQGSQKRAALHCRKRFTSSSFSDHMALLRVFQAWQKARSDGW
ERSFCEKNFLSQATMDMILGMRTQLLGQLRAIGFVRARGGSDIRDVNLNSENWAMVKAAL
MAGMYPNLVHVNQETSLLSSNREKKVHFHPTSILSQSQCKENGPAKSAQALPTDWLIYDE
MSRGQRMASVRCCSMVTPITVAIFGGCAKLPSSALQEPAAQKATDSLDDISDSETEDLAE
MRIDDWLVFQLDVEAAGLVFELRQKWQNLFIKRIRCPSKPWSQQDEAIIRTLVSVLAAEE
QGAGLQQPTGIGQRPRPMSSEEGPQASVKNFKKSPQLPTNDKSCRIPAASDLLQMKAHSR
DEASVPINQLSDDLHSSSNSSCSVSLDSPSDSPCPSSSGKQVSKPVSPQLAFSSVRYFIM
KSSNIRNIDISQQKGIWSTTPSNEAKLTKAFLEDNLIILIFSVQGSGHFQGYARMTSVNS
RESCQDWGFMGLGGVFSVEWIHKESLPFQCTQHILNPWNDNKKVQISRDGQELEPQAGSQ
LLLLWGRNSGSQVQ
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgccggtacaacgtcgcggaaaccgtccaggagccagcacacaccaccccgt
ggttccatctcaaacggcctcaaagacattcacatcgatgaagaagtcaaaatagcagtg
aacctctctctggagaggtttcgctacagtgaccagaaagagatggaatttccctcctcc
ttgggcagtaccgagagggcttttattcatcgaatggcacagtcccttggttacatttct
aagagcaaagggaaaggaccaaatcgcttcctcacaatcaagaagagggacggttcagac
aaacctcgtcctaccatgcccctcacgctgtcccacaattccttatatttaatccgcagc
ctgcttcagaggttccccgtcagcaataaggaacgcatagacctgcagcccaacagcaaa
agtggcatgtctatggctgcagagcctgacaacagttgtgacaggaacagggcaagcggg
cgcttaaacaacggcatacccatggtgcctcgtaggaggagtccatcagagctggacagt
tttcgacgctctctgcctgtgcatgaacgccaggaggagatcatccagctcatcagagaa
aacaaggtggtgctggtggtgggagagaccggctccggaaaaactacacagatcccccag
ttcctgctggatgagtgcagcaggaatggagagccctgcaggatcttctgcactcagccc
agacgcctggctgccatcgctgtggctgagagagtggcagctgagagaggagagagtgtg
ggccagactgttggttatcacatcagactagagagcagggtctcccccaagacactgctg
accttctgcaccagtggagtcttcctcagaacgttgatggctggagatgccagcttaaca
actgtcacacatgtcattgtggacgaggtacatgagcgtgatggtctgactgacttcctg
ctcactaagatgcgggatgtgcttcagaagatccccacactgaaactgattcttgccagt
gcagcgctggatatagacctgttccttcagtactttggctcttgccctgttatccacctc
aaaggaagacagtttgaagtgaaggagctctttctggaggatattctgaggctgacgggc
tttaacaataaggacatgaggaaatacaaagaagaaacacagagaaaggagaagaagcag
aaacgtttgacggagtggtgtaaggcagtggagaacaattctgttgaggaggaacagaga
acccctgtgtctgccccacgtttcctccaggacagcagctccctggacagagggaatgag
gatggcacagaacagctggagccgtggctggtgaaggagatggactcctgcatttccaac
attttcctctatgaagaccaggatgctttcattcagatcttcaacctcatcctctatgaa
ggcgttaacgtggactacaggcacagtgagacaggggccacgcctctgatggtggcagca
ggtcgaggtttcctcacacagatggagcagctgctcaacatgggggctgacatcaacgtg
aaggcatgcaatggatggacagccttagactttgccaaagacttccagcagacagatgct
atggatctcctcaaatcctccatccctttgggagacgtgagcagtctaggtgagtccact
ctggtgcagtgtggcggtgtagagctgagcgctgaagagcaggagctgctcaaactgtac
caccacagctttgatgatgagtatgtggacctggacctcatcatggatctgctgcacaac
atctgctccaccagcagtgatggtgctgtcctgatttttcttcctggatacgatgagata
gtggcactcagggaccgcatcttgtacgacgataagagattctccacccactctgagagg
taccaggtgttcactctacattcagacatgcagactctggatcagaagaaagccatgaag
acctctccacctggtgtcaggaagataattctttctactaacattgctgagacgagcatc
accatcaacgatgtggtcttcgtcattgattcaggaaaggtcaaagagaagtcctttgat
accctcagtcatgtgtccatgttaaagacagtttggatctcaaaagccagcgctctgcaa
cggaagggaagagctgggcgctgcagaccagggatttgcttccacctcttcagtcgactc
aggtttaaaaacatgctggaattccaggttccacagctgctgcggatgccactgcaggaa
ctgtgtctccagaccaaacttctggctccttcatcctgtccggtagcagagttcttgtcc
aaagctccacagcctcctcctgcacatgtcatcaggaacgctgtgcagatgctaaagaca
atagatgctatggaccagaatgaagacctgactgatctgggctaccacctggctgatcta
cctgtggagccccacctgggcaagatggtgctctgcgctgtggtgctaaagtgtctggac
cccattctaaccattgcctgtacactggcctatcgtgacccctttgtccttcccgcccag
ggctctcagaaaagagctgctctacactgccgcaaacgtttcacttccagctccttcagc
gaccacatggccctgcttagagtcttccaggcatggcagaaggcccgcagtgatggttgg
gagaggtccttctgtgagaagaatttcctgtcccaggccaccatggacatgattcttggc
atgaggacacagctgctgggacagcttcgtgctattggttttgtgcgggcccgtgggggc
agtgacatccgtgatgtgaatctgaactctgaaaactgggccatggtgaaggcagccctg
atggctggcatgtatccaaacctggtccatgtcaaccaggagacctctctgctttctagt
aacagggaaaagaaggtccatttccatcccacatctatcctgagccagtcccagtgcaag
gagaacggcccagccaaatcggcccaggcccttcccacagactggttgatctacgatgag
atgagccgaggccaaaggatggccagtgtccgctgttgctccatggtgactccaatcact
gtggccatatttggaggttgtgccaaactaccaagctctgctctgcaagaacctgctgca
cagaaagctactgactcactggatgacatcagtgacagtgagacagaggacctagctgaa
atgaggattgatgactggctcgtctttcaattggacgtagaggctgcaggactggtgttt
gaactgaggcagaagtggcaaaatttgttcatcaagaggatccgttgtccttcgaagccc
tggtctcaacaagacgaggccatcatccggaccctggtttctgtgcttgcggccgaggag
cagggggcaggactgcagcagcccacggggattggccagcggccccggcccatgtcatca
gaggaggggccccaggcttctgtgaagaacttcaagaagagcccccaactacccaccaat
gacaagtcttgcaggatacctgcagcctcagacctgcttcagatgaaagcccacagcaga
gatgaggcctcagttcccataaatcagctctcggatgaccttcactcctccagtaattct
tcctgctctgtgagcttggacagtccctctgacagcccctgtccctcctcttcaggaaag
caggtctcgaagccagtgtccccacagctggccttttcatcagtgcggtacttcatcatg
aagagcagcaacatcaggaacattgacatttctcagcagaaaggtatctggtccaccaca
ccaagcaatgaagccaaactcaccaaggccttcctggaggacaacctcatcatcctcatc
ttctcggttcagggctctggacacttccagggctatgctcgcatgacttcagtcaacagt
cgggagagctgccaggactggggcttcatgggactaggaggagttttcagtgtagagtgg
atccacaaggagagtcttcccttccagtgcacccaacacatcctcaacccatggaacgac
aacaagaaggtccagatcagcagggacggacaggagttggagccccaggcaggcagccag
ctgctgttactgtgggggagaaactctgggagtcaggttcaataa
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