Micropterus salmoides (largemouth bass): 119914471
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Entry
119914471 CDS
T07309
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msam03021
]
119914471 (taf1c)
Transcription machinery [BR:
msam03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
119914471 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
119914471
NCBI-ProteinID:
XP_038589713
LinkDB
All DBs
Position
Unknown
AA seq
1100 aa
AA seq
DB search
MTNKMDYQFPQQLFPSFYNCGPPDSVLKHCAGNWGCYDRVRPQGSSGPLPSWTFTSRHQV
RGETWCHTEPVPLPLLSPKNSILWPSTPPDPLDFTEHMQNFFMDHCQDAFMCMSEILGEN
FNFKQGVRETYRKDSVHMWKVKNFLDMLKFKICPQSYSSSSMDAYSALLSDVVHTVPPEL
LGTLLYEELTEQRDRLLFSEVSTGGALSFVPFSQSGCGSQHGCLLYPGNQGLDCLNFHRV
ELQHHRGNYPCVDTSSSDPFSFQLKGPVRQISSASLFNNSCVAVRSDHLCGVWRFSERNE
PRLLQVINTREVATCISVSPHVLGEVLVASESGAANLWTVGRGIQKVREEDHNLYFNAKS
SWRWCEFSAHPRVMLYADRTGVELTDIRVNPALSHTLFRISNTSECRSGERLILSRYLGD
AHSFHHLITTQYSAYIMDERFPSVPMLKWDHMMQSPPIFCQVVPGLLSCGGTSTTKILLG
SHSSQEITLLQYSGGRAEACFSRGPPQALLRPKDSLKHLPVQIPHRLDTATTRLSLPATG
LTCIQKKEGGAGGKECICVLQLTEPGDIFYQILELEQPDCSRPPEAEDDPLPQQAPKKLP
QPTLNEATTSGRKTADHLQSVSQLVISDTSSDEGVIRPTQDPTAQRLVAETPERDQRALN
IYSSSEESESEGKGRKLRQLRLQVVVNDDPELDEVSELDAGVKDGKEGKDGADNTEEPGS
SSSPSQAGLSEWQTPIKLSDGARVTWKHWLQKLMQKSREKKPRQRCLQHLEINTAGLHLS
DDEARDPAEEERVQSLCHDMRAHMSKRSLLVHRTVSASLGSPDVVMVPNPVDTEIWTDAL
SRRLTLSWQGEEAWQAWWVDQLGLNREEKVQALKRRRRKEKEGKRASGRRLELSGSFTSS
VSYQSDLDSFSDSTGWSSAASPGVWSDTEGTMSQLEAFSERGTPGGGTPNTPVPTLTATP
QSLKDKQVDQQTPSCSHSLSLSQTPKRDSTPANKRNKRPAEVCLSSLFALQDEASQHDIY
FVEEDDTGHPPPPPVTSSSQLRMSQSVPVRSLGVNLSQDASGWSGFSQSLSLSQSSQGRL
GLSQASQASQPKRKKSRMGF
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgacaaataaaatggattaccagtttccgcagcagctttttccttcgttttacaactgc
ggaccgccggactcggtcctgaaacactgcgcaggaaactggggctgctatgaccgagtc
agaccgcagggcagctctggtcctctccccagctggacatttacatccagacatcaggtc
agaggggagacgtggtgtcacactgagccagtaccgcttcctctcctgtctcctaaaaac
tctatcctttggccttcaacgcctccagatccgctggacttcacagaacatatgcagaac
ttcttcatggatcactgccaggacgccttcatgtgcatgagtgaaattctaggagaaaac
ttcaacttcaaacaaggagtgagagagacataccggaaggattcagtccacatgtggaag
gtgaaaaactttcttgacatgctgaagtttaaaatatgtccgcagtcgtattcctcaagc
tcgatggatgcgtacagcgccctgctgtcagacgtggtgcacaccgttcctcctgagctg
ctgggcactctgctgtacgaggagctgactgagcagagggaccgccttctgttctctgaa
gtatctacagggggcgctctgtcctttgtcccattttcacagagtggctgcggctctcag
cacggctgcctcctctatcctggaaaccagggactggactgcctcaacttccatagggtg
gagctgcagcaccacagagggaattatccatgtgtggacaccagcagcagtgatccgttt
agcttccagctgaaaggtcctgtcagacagatcagctccgcctccctgttcaacaactct
tgtgttgcagtgcggtcagatcacctgtgtggagtttggaggttcagcgaaaggaacgaa
cctcgtctgctgcaagtcatcaacactagagaggtcgcaacctgcatcagcgtcagtccg
catgttttaggtgaagttctggtggcgagtgagagcggagcagcaaacctgtggactgtc
ggccgaggcatccagaaggtccgggaggaagaccacaacctgtacttcaatgccaagtca
tcatggcgatggtgcgagttctccgcccacccgagggtgatgctgtacgcggacaggacg
ggggtggagctcacagacatcagggtgaatccagccttgagtcacactctgtttcgtatc
agcaacacctccgaatgtcgcagtggcgagaggctcattctttccagatatctgggagat
gcccactcattccaccacctaatcaccactcagtactcagcttacatcatggacgagcgt
ttcccaagcgtgcccatgctcaagtgggaccacatgatgcagtccccgcccatattttgt
caggttgttcctggcctcctctcctgtggcgggactagtactacaaagatcttgctgggc
tcccacagttctcaggaaatcacactgctgcagtactcaggaggcagggcggaggcctgt
ttcagtcgaggtcctcctcaggctctgctcagacctaaagacagtctgaagcaccttccg
gtccaaatccctcaccgcctggacactgcaaccaccagattgtccttacctgccacaggt
ctgacttgtatccagaagaaagaaggaggagccggaggtaaggagtgcatctgtgtccta
cagctgacggagccgggagatattttctaccagatcctcgagcttgagcagccggactgc
tctcgacctccagaagcagaggacgacccgctgcctcaacaagcacccaaaaaactgcca
cagccaactctgaatgaagccacaacatcagggagaaaaacagcagatcatcttcagtca
gtttctcagctggttatatcggacacgtcgagcgatgagggcgtgatcaggccaactcag
gatccgactgcgcagaggctggtggctgaaacaccagagagggaccaacgagctctgaac
atatactcctcctctgaggagtcggagtcagaagggaaaggccgaaagctaaggcagctg
cggctgcaggtcgtcgtcaatgatgatccagagttggatgaagtgagtgaattggacgca
ggcgtaaaagatggaaaggaaggtaaagacggcgctgataatactgaggaacctggcagc
tccagcagcccgagtcaagctggtctctctgagtggcagactcccataaagctcagcgac
ggtgctcgtgtcacgtggaaacattggctccagaaattgatgcaaaaaagtcgtgaaaag
aagccccgccaacggtgcttgcagcacttggagataaacactgcaggcctccacctgtct
gacgatgaagcgagagatccagcagaagaggagcgagtacagagcctgtgtcacgatatg
agagcgcacatgtccaaacgctcactgctggttcaccgcactgtctctgcctccctcggg
tctccagatgtggtaatggtgccgaaccctgtggacacagaaatctggacagatgcgctc
agccgccgcctgaccctctcctggcagggggaggaggcgtggcaggcgtggtgggtagac
cagttggggctcaacagggaggagaaggtgcaggctctgaagaggaggaggaggaaggag
aaggaaggaaagagagcctccggccggcgcctggagctgtctgggagcttcacctcctct
gtcagctaccagtcagacctggacagtttctctgattcaacaggatggtcctctgctgcg
agcccaggggtgtggtcagacactgaagggacaatgtcccagttggaggccttttcggag
cgtgggacaccggggggcgggacacccaacaccccagttccaacactgaccgccacacct
caaagtttgaaagataagcaagtagaccagcaaactcccagctgctcccactccttgtct
ctgtcccagacaccaaaacgtgactccacaccggcaaataagaggaacaaacgcccagcc
gaggtctgcctcagctctctgttcgcactacaggacgaggcctcccagcatgacatttac
tttgtggaagaggatgacacgggtcaccccccacctccacctgtgacctcctcctctcag
ctccgcatgtcccagtcagtccctgtgaggagcctcggcgtgaatctgtcccaggacgcc
tccggctggtcgggtttctcccagtctctgtccctctcccagagttcacagggtcgactg
gggctgtctcaggcatcacaggcatcacaacccaagaggaagaagtctcgaatggggttt
tga
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