Micropterus salmoides (largemouth bass): 119914914
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Entry
119914914 CDS
T07309
Symbol
si:ch211-196i2.1
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119914914 (si:ch211-196i2.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
msam00536
]
119914914 (si:ch211-196i2.1)
Glycosaminoglycan binding proteins [BR:
msam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119914914 (si:ch211-196i2.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
119914914
NCBI-ProteinID:
XP_038590383
LinkDB
All DBs
Position
Unknown
AA seq
1802 aa
AA seq
DB search
MFNWLVRWTVCLLVFKTTSTDDAAVDFGGESGSGMLQTDEVNILQELSLQVSNSSNASMT
VDDNRCQVLQVGQYSTLAVPVRYLLTDGFADEFSLLVQLQSPQSDERSVFTMLSPDSHVM
LQLRISTSAIIFIGTQQRHYEFPVSGLSDGKWHHVAVSVSAKRLALYVDCSLLESVDWVY
HGMGISTDGLLMVGGIIEGFETPFEGHLRQLTFLMGDPGAAQQHCSHHPPRCGETAPKTA
RSPRTNALENILLSSNDLEDLLGNPEDKPFLSFGRTNMFLQRGSSRGDGTVPSGSDRKGT
VGRGDVFVVDEETDLLDPIFQNGGQVNPQWKPSRNGPKGSQKEKSKLLEENITTDKKTDS
SGRTTSLFPRKPSNDITDLDIGSATKKPSVGFPVLPTIPSDPRTSTDSTHTLREETDERS
GSVSPTPHVTITNGKQPDKEQPGIVTIVSRDRDLVLGSDGKKYRLQRGPPGRMGLPGQEG
CPGEPGLPGFKGDKGNTGPEGSPGRKGEPGPPGPAGLPTLYLWKNTAEEWAAFQQTNFYQ
LLHAGWPSKEGPAGPPGETGRPGIQGPPGEPGERGRPGMPGEMGEPGHRGPPGRDGTPGR
DGENGEDGQPGSAGAPGTQGPWGYRGERGSKGEKGDEGLIGLNGPRGENGEPGEKGSTGL
PGPPGPVGPPGPQGIRGGYGPEGPRGPDGENGLDGPPGLPGPTGAPGSTGQVGSQGVNGS
RGDMGPAGSIGPKGPQGPPGLEGQMGPPGLRGPQGHPGLIGAPGLKGDPGPMGPLGARGD
PGFEGPMGAPGERGPMGFPGVTGKRGPDGDKGDPGTKGDKGFQGAPGIRGPQGERGPIGF
PGFQGTKGQPGPKGPEGTNGETGPQGKQGSRGLKGNRGPDGRTGKPGPRGNKGRTGQRGH
DGQPGPSGLPGPPGPEGAEGKPGTQGPSGAAGSAGSKGPMGFQGAAGDRGADGPPGSPGP
PGKPGPPGSPGPPGDRGFTGKPGMEGPQGPVGMYGIQGTVGMRGPPGFIGERGEPGLRGL
PGPAAKPGPAGPPGPPGEKGPRGPQGRPGDEGPKGIQGPPGPPGLPGVDGAIGKPGPRGS
QGPPGSQGPQGPAGITGPQGADGLLGAAGERGQKGLPGLPGDDGPTGQDGQQGLHGQTGT
EGPPGQKGYQGDIGPCGKPGPPGLPGERGLEGPKGLQGPPGPVGKEGDAGHPGEAGDPGP
KGEKGEVGPPGLSGREGPWGTLGENGERGPKGEKGHVGLMGEPGLMGEVGPAGLAGLKGI
TGPLGPPGLDGPQGPKGDSGPVGTTGPPGSEGPRGITGARGVRGDTGGLGPPGLVGQVGP
QGDLGHKGEPGPPGLKGEPGASGVSGEQGEDGLPGIRGPPALPGFEGPPGEMGPQGPPGP
TGAPGVLGRPGPEGKQGMKGEKGDDGMNGSPGKMGHVGRRGKRGKAGVRGTRGDRGPKGE
KGDTGLAGLPGWPGLIGIPGLRGEPGDQGEKGKEGEKGDHGLPGPAGADGMKGIRGPVGL
PGPLGPKGEQGNIGPPGPRGTPGMPGLPGLFGLKGLKGYQGLPGLPGRRGLPGPPGVPGP
SGQSLNMTLTQLKDLMYVSDKPNYPLIQTLLDSLQHELRLLVDPPDGSKEHPATTCLELW
LCHPEYSSGMYYIDPNQGSPADTLLAYCSFSSASKQTCIHPRDSQLPMKAWMEGFSEEGS
FQWLSRLEQGFQFYYPGANVVQMRFLRLHSTTATQKVTYSCHPGHRLGQTDRDIKFLTDT
RKQSYLGALKDCVPGEETISGPRESVFEFEDLQLLPLRDVALMGGGNFTHQFGFTVGPVC
FS
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgttcaactggttggtaagatggacagtttgccttctcgtgttcaaaacgacgagcacc
gacgatgcagcggtggattttggaggcgagtccggctccgggatgctgcagacagatgag
gtgaacattctgcaggagctttctcttcaggtgtcgaacagcagtaacgcctccatgact
gtggatgacaacaggtgtcaagtcctacaggtgggacagtactccaccttggctgtccct
gttcgatatctcctgactgatgggtttgcagatgagttcagtttactggtgcagctgcag
agccctcagagcgatgaacgcagcgtcttcaccatgctcagccccgacagccacgttatg
ctgcagctgcggatcagtacttccgccattatcttcataggaacacagcagcgacactat
gagttcccagtcagcggtctgtctgatggaaagtggcaccatgtggccgtcagtgtgtct
gccaagcggctggcgctgtatgtggactgctctctgctggagagtgtggactgggtttac
cacggcatggggatcagcacagatgggctgcttatggtgggaggcatcatcgagggcttt
gagactccatttgaaggtcatctccgacagctgaccttcctgatgggtgacccaggtgct
gcccaacaacactgcagccaccacccgccccgctgtggtgagaccgcccctaagactgct
cgctccccgcgaaccaacgccctggagaatatactgctgtcctcgaatgaccttgaggac
ctgctggggaatcccgaggacaagccatttttgagctttggcagaactaatatgtttctg
caacgagggagttctagaggggatgggacggtgccttcaggatccgatcggaaaggtaca
gtaggtcgtggggatgtctttgtggtggatgaagaaactgacttgttggatccaatattc
caaaatggcggacaagtgaaccctcagtggaaaccttccagaaatggaccgaagggaagc
cagaaggagaaatcgaaactattagaggagaacataaccacagacaaaaagaccgactcc
agtgggagaactacatcactgttccccagaaaaccatccaatgacatcactgacctggac
atcggaagtgccaccaagaagccctctgtgggctttcctgtacttcctacgatcccttca
gatcccagaacatccacagactccacacacacactaagggaggagacagatgaaaggtcc
gggtctgtctcccctacacctcatgtcaccatcaccaatggtaaacaaccagacaaggag
caacccggcattgtgaccattgtatccagggacagagacctggtcttgggctcggatggc
aaaaagtatcggctccagagaggaccaccgggccgaatgggtctcccaggacaggagggc
tgtcctggtgagcctggccttcctgggtttaaaggtgataagggtaacacaggccctgaa
gggagtccaggaagaaagggggagccaggacctcctggaccggcaggtttaccaaccctc
tacctgtggaagaacacagcggaggaatgggctgcctttcagcaaaccaatttctaccag
ttactccatgctggttggcctagtaaagaaggccctgcaggaccacctggagagacaggc
aggcctggcatacaggggccacctggtgaacctggggagcgaggacgaccagggatgcca
ggagagatgggtgagccgggtcacaggggccctccaggacgagacgggaccccggggaga
gacggggaaaatggagaagatggtcagcccggatcagctggtgctccgggaacacagggc
ccgtggggatacaggggagaacgagggtccaaaggggaaaaaggtgatgagggtctcatt
ggcctcaatggtccaagaggggaaaatggcgaaccgggtgagaagggctcaactggtttg
ccaggcccacctggtcctgtcggaccaccgggtcctcaggggatccgaggtggctacggg
ccagaggggccccgtgggcctgatggggagaatggactggatggccccccaggtctgcca
gggccgacgggcgcaccaggttctacaggacaagttggcagtcaaggagttaatggttca
aggggggacatgggacctgctggcagcattggtcccaaaggcccacaggggcctccaggt
ttagagggacagatgggacctccaggactcagaggaccccaaggacacccagggctgata
ggtgctcctggacttaaaggagatcccgggcctatggggcccctgggtgcccggggggat
cccggctttgaggggcccatgggtgcaccaggggaacggggtcctatgggttttcccggg
gtaacgggtaaaaggggaccagatggagacaagggggatccaggaactaaaggcgacaaa
ggttttcaaggggcaccaggtattaggggtcctcagggagagaggggccccatcggcttc
ccaggtttccaaggcaccaagggccagcctggccccaaaggccctgagggcacaaatgga
gaaactggtcctcagggaaaacaaggcagccgtgggttaaaggggaacaggggaccagat
ggacgtaccggcaaaccaggacccagaggaaacaagggtcggactggacagaggggccac
gatggccaaccgggcccttcgggtttgccggggccacctggaccagagggagcagaagga
aagcctggtacacagggtccctcaggtgcagctggcagtgctggcagtaaaggaccaatg
ggttttcaaggagctgctggagacagaggagcagacggcccaccagggtctccggggcca
ccagggaaaccaggacctccaggatcaccaggccccccaggagacaggggttttacaggg
aagccaggcatggagggacctcagggcccagtaggcatgtatggcatccagggcaccgtg
ggcatgcgtgggcctccagggttcattggagaaaggggtgagccaggtttacgaggttta
cctgggcccgctgcgaagccaggacctgcaggtcccccaggtccgcctggagagaaggga
ccccggggacctcagggtcggcctggagacgaagggcccaaagggatacagggcccacca
ggccctccaggtctccctggtgttgatggggcaattggaaaaccaggaccgaggggaagc
caagggcccccaggatctcaggggccacaggggccagcaggaatcacaggcccacagggt
gctgatggattattaggagcagcaggggaaagaggacaaaaggggttacctggcttgcct
ggtgacgatggccccacaggacaagatggacaacagggtctccatggccaaacaggaact
gaaggcccaccaggacagaaaggatatcagggggacattgggccttgtgggaaacctggt
cctccagggcttccgggagagagaggactcgagggcccaaaaggattgcagggaccacct
ggaccagtcggtaaagagggtgatgccggccatcctggtgaagctggagatcctggaccg
aaaggggaaaagggtgaggtgggacctccagggttgtctggtcgagaaggcccttgggga
acccttggagaaaatggtgaaaggggcccaaagggggagaagggccacgttggactaatg
ggtgaaccggggctgatgggtgaagtgggacctgcaggtctggccgggttaaagggaatc
acaggccctctgggacccccgggcctagatggacctcagggcccgaagggggattctggg
cctgtagggactactgggcctccagggagtgaaggccctcggggaataactggtgcacgt
ggtgtcagaggagacacgggggggctgggaccacctggcctagtaggacaagttggacct
cagggagacctgggacataaaggggaaccagggccaccgggactgaagggagagccggga
gcctcgggtgtgtcaggggaacagggtgaggatggtctgccaggtatccgaggtcctccg
gctctgccagggtttgaggggccacctggagagatgggaccccagggtcccccaggtccc
acaggggctcctggagtgctaggaagaccaggacctgaagggaaacagggaatgaaaggg
gagaagggagatgatggcatgaatggatcaccagggaagatgggccatgttggaaggagg
gggaaacgggggaaagccggagtcagaggaaccaggggagacagagggccgaagggtgaa
aagggagacacaggactggccggcctccctgggtggccagggctcatcggaatccctggc
ttacgtggagagccgggagatcaaggtgaaaaggggaaagagggtgagaaaggagaccat
ggattgcctggaccagctggagctgatggcatgaagggtattcgtggtcctgttgggttg
ccaggtccactgggcccgaagggagagcagggaaatattggtccaccaggaccgaggggt
acaccggggatgccaggactgcctggtttgtttggattaaagggtttgaaaggctaccaa
ggtttacctggtctgcccggcaggagggggctcccaggcccacctggggttccaggaccc
tcaggacagtcactgaacatgacgttgactcaactcaaggacctgatgtatgtgtccgat
aagcccaactaccctctgatccagactctgctagattctctgcagcacgagcttcggctg
ctggtggatcctcctgatggcagtaaggagcatcctgccaccacctgtctggagctctgg
ctctgtcaccctgagtacagcagcggaatgtattacatcgaccccaaccaggggagccca
gccgacactctgctggcctattgcagcttctcctccgcatcaaaacagacctgcattcat
cctcgagactctcagctgcccatgaaagcctggatggaaggcttttctgaagaaggatct
tttcagtggctcagcaggttggaacaggggtttcagttttactatccaggtgctaacgtg
gtccagatgcgttttctgagattgcatagtaccaccgccacccagaaggtgacctactcc
tgccacccaggacacagactgggtcagacagacagagacatcaaattcctcactgataca
aggaagcaaagttacctcggagctcttaaagattgtgtgcctggagaggagaccatttct
ggacctcgggagtctgtgtttgagtttgaagacctccagctgcttcctctgagagacgta
gcactgatgggaggtggaaacttcacacaccagtttggcttcactgtcggacccgtgtgt
ttcagctag
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integrated database retrieval system
