Micropterus salmoides (largemouth bass): 119915446
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Entry
119915446 CDS
T07309
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msam03016
]
119915446 (trub1)
Enzymes [BR:
msam01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
119915446 (trub1)
Transfer RNA biogenesis [BR:
msam03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
119915446 (trub1)
Prokaryotic type
119915446 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
GAIN_A
Motif
Other DBs
NCBI-GeneID:
119915446
NCBI-ProteinID:
XP_038590911
LinkDB
All DBs
Position
Unknown
AA seq
289 aa
AA seq
DB search
MAGNISSAAAPITSSLSKLQALNGLFAIYKKQGPTSADVLNALKEALLKEAGVQNPNPRK
RKKQSLKMGHGGTLDSAASGVLVVGIGNGTKMLSTMLAGSKKYVAVGELGKATDTLDATG
SVILEKDYEHITRLDLEDKLKAFTGDIMQVPPLYSALKKDGQRLSVLLKKGHKVEAKPAR
PVTVYNLTLQEFKPPHFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELIRTKQGQFTLE
EHALHEEQWTLERILFSLQPCSESEQALDCTKPPEADTLGTHSEIKMKT
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaaacataagcagcgctgcagctccgataactagttctctatctaaactacag
gctttaaatggactgtttgcaatatataaaaaacaagggccgacatctgcagacgtgtta
aatgcactcaaagaagctttactcaaagaagctggagttcaaaacccaaacccgcggaag
aggaagaagcagagcctgaagatggggcacggagggacgctggacagcgctgccagtggg
gtgctggttgttggcattgggaatggcacaaagatgctcagtacaatgttggctggttct
aagaaatatgttgctgtaggtgaactggggaaagcaacggatactcttgatgccactgga
agtgtgattctggagaaagactatgaacacataactaggttggaccttgaggacaagctg
aaagctttcactggtgacatcatgcaagttcctccactctactccgcactgaaaaaagat
ggccagcgtctgtctgtcctgctgaagaaaggtcacaaggttgaggccaaaccagccaga
ccagtcactgtgtacaacctgaccctgcaagagttcaagcctcctcacttcactctggat
attgagtgtggtggtggcttttatgtcagaagcttggtggatgacctgggaaaagctctg
tcatcatgtgctcacgtgaaggaactgatccggaccaagcagggtcagttcacccttgag
gagcatgccttacatgaggagcagtggacactggagcgtatcctgttctctctgcagccc
tgctcagagtcagagcaggctttggactgtacaaaaccaccagaagctgacaccttaggg
acacactctgagatcaaaatgaaaacctga
DBGET
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