Micropterus salmoides (largemouth bass): 119915639
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Entry
119915639 CDS
T07309
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119915639 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msam03400
]
119915639 (msh2)
DNA repair and recombination proteins [BR:
msam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119915639 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
119915639
NCBI-ProteinID:
XP_038591187
LinkDB
All DBs
Position
Unknown
AA seq
935 aa
AA seq
DB search
MAVQPKQNLSMDSAAEHGFLNFIFSMPEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKNLGSGSRKLESVVLSKLNFEAFVKDLLLVRQYRVEVYKNHSKSSKEHDWKIEYKA
SPGNLTQFEEILFGGGTGAEGCAGVVAVRFSTGADGQRVVGVGYVDAAQRTMGVCEFPDN
EIFSNLESLLVQISPKECLLAQGEANTDGNKLREVVQRGGILVSDKKRAEFSCKDVVQDL
NRLLRVKRGETVASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLELGQYMR
LDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFLRHTATLQDCYRVYQAVSHIPALVTAL
EKYSGSYEVLLEAVFLSPLRDLQNDFAKYQEMIETTLDMNQIDHHEFLVKASFDPALSEL
REKMDTLENSMQAVLNSAARELGLDAGKTVKLESNAMLGFYLRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTKNREEYEEAQNAIVKEIINIASGYVDPLQTLSDVIAQ
LDGVASFAVASVSAPVPYVRPRLLADGCRRMELQQARHPCMETDADTAFIPNNITFVQGE
KSFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSILARVGAGDSQVKG
VSTFMSEMLETAAVLRSATGNSLIIIDELGRGTSTYDGFGLAWAISEHIASNIGCFCLFA
THFHELTALAAQQPSVHNLHVTALTSHNTLTMLYRVKPGVCDQSFGIHVAELACFPPSVV
AMAKEKAEELEEFQEPGGEKSEQEEEPEAKRRRTDKQVGENLIKDFLEKAKSLSVATMSE
EEVKAELRRMKQELIVKNNTYITEILARCVPAKTA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaacagaacctgtctatggacagtgcagccgagcatggctttcta
aacttcattttttctatgccggagaaaccggacactactttcagaatatttgaccgtaac
gactactacactgttcacggaaaagacgccatattcgcagcgaaggaagttttcaagacg
aatggggtcatcaaaaatctgggctcggggagccgcaagctggagagtgtggtcctgagc
aagctgaactttgaggcctttgtgaaagacctgctgctggtgaggcagtacagagtagaa
gtgtacaagaaccacagcaagagcagcaaggaacacgactggaagatcgagtacaaggcg
tctccaggaaacttgactcagtttgaggagattctgtttggtggtggaaccggagcggag
ggttgtgcaggagttgttgctgttcggttttctacaggagctgacggacaacgtgtggtc
ggggtcggctatgtggacgcagcccagaggacgatgggagtgtgcgagtttccagacaac
gagattttctccaatctggagtccctgcttgtccaaatcagcccaaaagagtgtctttta
gcccagggtgaagccaacacagacggcaacaaactacgggaggtggtacagcgtggcggc
atactggtctctgacaagaagagagcggagtttagttgcaaggatgtggtgcaggatctc
aacaggctgctgagggtgaaaagaggagagactgtggcgagcaacacactgcctgagctg
gataaacaggtggcgatgtcgtgcctggctgcagtggtgcgtttccttgaactgctgtct
gatgagtctaacttcaactccttcagtctgaccactctggagctgggtcagtacatgagg
ctggacaatgctgcagtgagggctcttaacctcttccagggatcgcctgacgacaccagt
ggagctcattcattggccggtctgttgaacaagtgccgtacgccgcagggtcagcggctg
gtcaaccaatggatcaaacaaccactcatggacaaaaccaaaatagaggagaggctggac
ctggtggagagttttgtgtgcgactctgagctcaggcagacctgtcaggaggacttgctg
cggcggtttcctgatcttcaccgtctggccaagaagttcctccgtcacactgcgacactg
caagactgctaccgcgtctaccaggctgtgagccacatccctgccctcgtcacagccctg
gagaaatactcgggtagctacgaggttctgttggaggcggtgttcctgtctcctctcaga
gacctgcagaatgactttgcgaagtaccaggagatgattgaaaccactctggacatgaac
cagattgaccaccacgagttcctggtgaaggcgtcttttgatccagcattgagtgaactg
agagaaaagatggatacgctggaaaatagcatgcaggcagtcctgaacagcgcagccagg
gaactaggtctggatgctggtaagacggtgaagctggagtcaaacgccatgctcggcttt
tacctgagagtcacctgcaaggaggagaagagtctgaggaacaacaagaaattcaccacc
ctggatgttcagaagaacggagtgcgcttcacaaacagtaaactgagctctctaaatgag
gagtacaccaagaacagggaggagtatgaggaggcccagaatgccatcgtgaaagagatc
atcaacattgcttcaggttacgtggatcccctccagacgctgagcgacgtgatagcacag
ctggacggtgtggcgagttttgccgtggcgtcagtctctgctcccgtgccgtatgttcgg
ccccgtctgttggcggacggctgcaggcgtatggagctgcagcaggccagacatccctgc
atggagacggacgcagataccgccttcatacccaacaacatcaccttcgtccagggagag
aagagcttctatattataacaggaccaaatatgggcggcaagtcaacatttatccggcag
gtaggtgtgattgcgctgatggctcagatcggctgctttgtgccatgcgagaaggcggag
cttagcgtgatcgacagcatcctggccagggtgggagcgggagacagccaggtgaaagga
gtatctaccttcatgtcagagatgctggagacggctgccgttctgcgctcggccacggga
aactccctcatcataatcgacgagcttggcagaggcacgtccacatacgatggcttcggt
ctggcctgggccatcagcgagcacattgcctccaacatcggctgcttctgtctgtttgcc
actcacttccatgagctgacggcgctggcagcacagcagccctctgtccacaacctgcac
gtcacagccctgacctcccacaacacactcaccatgctgtacagagtcaaaccaggtgtg
tgtgaccagagttttgggatccacgttgccgagttggcttgcttcccaccatctgtggtt
gccatggcgaaggagaaggcggaggagctggaggagttccaggaacctggaggggagaag
tcagagcaggaggaggaacctgaggccaagagacggcggacagacaaacaagtgggggag
aacctgatcaaggacttcctggagaaggctaagtcactttctgttgccaccatgagtgag
gaagaggtgaaggcggagctccggagaatgaagcaggagcttattgtcaaaaataacaca
tacatcacggagatccttgcacgctgtgttcctgcaaaaacagcttga
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