Micropterus salmoides (largemouth bass): 119915980
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Entry
119915980 CDS
T07309
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119915980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msam03041
]
119915980
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119915980
Spliceosome [BR:
msam03041
]
Complex C
Other components
Step II factors
119915980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
Flavi_DEAD
T2SSE
TsaE
PhoH
Sigma54_activ_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
119915980
NCBI-ProteinID:
XP_038591725
LinkDB
All DBs
Position
Unknown
AA seq
1218 aa
AA seq
DB search
MSDGGVDELSQLEYLSLVSKVCTELDNHLGISDKDLAEFVIDLAEKQPTFDGFKALLLQN
GAEFTDSLIGNLLRLIQTMRPPSKASTSKASEPLVKPKSEKEKLKELFPALCRPNDPAPK
KLLDEDDVKVAADAMKELEMFMPSVSGSDSKSSKSRSEKSRRHSRSRSRSREKDRHRDRD
RDRDREKDRKRRHRSHSRSRSRSRDRDRHRDRERDRDRGKRRDKSSRWTERSPSPKKDQD
RDSDRWKDKHVDRPPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRRE
GRVANVADVVSKGQRVKVKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNAGPDGGEEIS
MRNPDRPSNLNLGHAPELEQDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDDE
TGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSAL
AKERRELKQAAREAEMDSIPMGLNKHWVDPLPDADGRQIAANMRGIGMMPNDIPEWKKHA
FGGNKASYGKKTQLSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYL
AEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMT
DGMLLRECLIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDA
VKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDVLVFLTG
QEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIA
ETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRL
YTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLY
TLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPK
DKQALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQM
LGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALF
NRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRLEPLY
NRYEEPNAWRISRAFRRR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacggcggagttgacgagctatcgcagctagaatatttgtctttggtgtctaag
gtctgcacggagcttgacaaccatctgggaataagtgacaaagatttagctgaatttgtc
atcgacctcgccgaaaaacaaccaacctttgacggattcaaagctcttttgctccaaaat
ggagctgaattcacagattctctcatcggtaatttgctcaggcttattcagactatgcga
cctccatccaaagcatctacgagtaaagcctctgagcctttggtcaagccgaagtcagaa
aaggagaagttgaaggagctgtttccagcactttgtagaccaaatgatccagcaccaaag
aagctgctagatgaagatgatgtgaaggtagcagctgatgccatgaaagagctggagatg
tttatgcccagtgtcagtgggtcagactctaaaagcagcaagagcaggtcagaaaagagc
agacgccacagccgaagtcgcagcagaagcagagaaaaagacagacacagagaccgggac
cgagatagagatcgggagaaggacaggaagagacggcatcgttctcactcccggtccagg
tctcgctccagggaccgtgatcggcacagagatagagagagagacagagatcgcggcaaa
agaagagacaaatcttcccgttggactgagcgctcaccgagccccaaaaaagaccaagac
agagactctgaccgctggaaggacaaacatgtggaccgccctccaccagaggagccttct
gttggagacatctacaacggcaaagtcaccagtatcatgcagtttggatgctttgttcag
ctggagggattaaggaaacgatgggagggtttggtccacatttctgaactgcgtagagag
ggccgcgtggccaacgtggctgatgttgtaagcaaaggccaaagagtcaaagtcaaggtg
ctctcattcactggctcgaagaccagcctcagtatgaaggatgtggaccaagagacggga
gaagacctcaaccccaacaggaggaggaatgcgggcccagacggaggggaggagatctcc
atgaggaaccccgaccggccgagcaacctgaaccttggccacgcccctgagctggagcaa
gacgacaccctggagcgcaagaggctcaccaaaatttctgacccagagaagtgggagatc
aaacagatgattgctgccaatgtcttgtcgaaagaagagttcccagattttgatgatgag
actgggatccttcctaaagttgatgatgaagaggatgaagatttggaaattgagctggtt
gaagaagaacccccgttcctgaggggacacaccaaacaaagcatggacatgagccctgtc
aagattgtcaagaatccagatggctctctgtctcaagcggccatgatgcagagcgccctg
gctaaggagagacgagagcttaagcaggctgcacgagaggcagagatggactccatcccc
atggggctgaataaacactgggtcgacccgctgccagacgctgatggtaggcagattgct
gccaacatgagaggcattggcatgatgcccaatgacatcccagagtggaagaagcatgct
tttggaggcaacaaggcttcctatggaaagaagacccagctctccatcttggaacagagg
gagagcctgcccatctacaagctgaaggagcagctcattcaggctgtacatgacaaccag
atcctgattgtgatcggagagacagggtctggtaagaccacgcagatcactcagtacctg
gcggaggcaggctacaccaccagggggaagattggctgtacgcagccccgtcgtgtggcc
gccatgtcagtggccaagagagtgtctgaggagtatggttgctgtctaggacaagaggtg
ggttacaccatccgtttcgaggactgcaccagcccagagacggtgatcaagtacatgaca
gacggtatgctgttgagagagtgcctgatcgactctgaattgggccagtacgccattatc
atgttggatgaagctcacgagaggaccatacacactgatgttctctttggtttgctcaag
aagactgtgcagaaacgcacagacatgaagctgattgtaacatcagctacactggatgct
gtgaagttctctcagtatttctatgaagcacccatcttcaccatccctggaagaacttat
ccggttgaggttctctacaccaaagaacctgagacagactacctggatgccagtctcatc
acagtcatgcagattcatctgactgaacctccaggggacgtcctggtgtttctaactgga
caggaagagatcgacaccgcctgcgagatcctgtatgagagaatgaagtcactggggcct
gatgttcctgaactgattattctgccagtttattctgctctgcccagtgagatgcagacc
aggatatttgaccctgcacccccaggaagcagaaaggtggtcattgccacaaatattgca
gagacatctctgaccattgatggaatctattacgtagtggaccctggttttgtcaagcaa
aaagtctacaactctaagactggcatcgaccagctggtggtgactcccatctcacaggcc
caggccaagcagagggcagggcgagccggcagaacaggcccagggaagtgttacaggctc
tacacggagagagcctacagagacgagatgttgacaaccaacgtgccagagatccagaga
accaacttggccagcactgtgctctctctgaaggcaatgggcatcaatgacctcctgtct
tttgacttcatggacgctcctcccatggagactctgatcacagccatggagcagctctac
actctgggagctctggatgatgaaggtttactcacacggctgggtagaaggatggctgag
tttcctctggagccaatgctgtgtaagatgttgatcatgtctgtccatctgggctgcagt
gaagagatgctcaccatcgtgtcaatgctgtctgtgcagaacgtcttctacagacctaag
gacaagcaggctttggctgaccagaagaaggcaaagtttcaccaaccagagggtgatcac
cttacgctgctggctgtctacaactcctggaagaacaacaagttctccaacccctggtgt
tatgagaacttcattcaggctcgctccctgcgcagagcccaagacatccgcaaacagatg
ctggggatcatggacaggcataaactggatgtggtgtcttgtggcaaagccacagtacgg
gtccagaaagcaatctgcagtggcttctttcgtaatgctgccaaaaaggatcctcaagag
ggctaccgcacccttatagaccagcaagttgtatacatccacccctccagtgctctcttc
aatcgccagcctgagtgggttgtttaccacgaattggtgctgactaccaaggagtacatg
cgggaggtgactaccatcgaccctcgatggctggtggagttttcacctgctttcttcaaa
gtgtccgaccccacacgcctcagcaagcagaagaaacaacagcgcctcgagcctctgtac
aaccgttacgaggaacccaacgcatggagaatctctcgtgccttcagacggcgttga
DBGET
integrated database retrieval system
