Micropterus salmoides (largemouth bass): 119916992
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Entry
119916992 CDS
T07309
Symbol
zswim8
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger SWIM domain-containing protein 8
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msam04121
]
119916992 (zswim8)
Ubiquitin system [BR:
msam04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
119916992 (zswim8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Ribosomal_L24e
Motif
Other DBs
NCBI-GeneID:
119916992
NCBI-ProteinID:
XP_038592949
LinkDB
All DBs
Position
Unknown
AA seq
1962 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRIRAVKDPLQIGFHLSATVVSSQAGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIISWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPCRRLELSGQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCFFNWEVAY
PLEGITYCSADKKSATFCWSRAVQLQRGAKAAAGGGGESSEPGGGVRVEGGAGGDYKGRG
SGHSSQQEVAVRPKETILTKRKGLSVSGGGGMLVRLGGSVSLSLEDGGGKCMYKGPGSSS
GGKLKLTQGGGKGASVGGPGGSGGXGGGKHANAKRRTSSEDSSLEPDLAELSLDDGCSLA
LGAEASNTFEFLPPPPEMLPSPSPLLRDSRKYSSSNGGGKMFETKHVGHASAGLPAAEPA
PPCFPPKETVPVVMDIPGAAELAVEPVQNREEDVDSAGSTQPSTSTTTARSGTTQPSAKP
PRSRREAAFAAPAAGSGAAAAGGLANQGAEAAGGAAGGESVGEDDYQAYYLSAASEEGAD
RQLADNHQEEEPDIFAGMKPLEQEGRMEVLFACAEALHAHGYSNEACRLAVELATDLLAN
PPDLKVEQPQTKGKKSKVSTTRQTQVATNTLSKAAFLLTVLSERLELHNLAFSTGMFSLE
LQRPPASTKALEVKLAYQESEVVALLKKIPLGLVEMSAIRERAEQLRDGNFCDYRPVLPL
MLASFIFDVLCTPVVSPTGSRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLL
CEGTRRVKGDLALALMITYKDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAAGSQR
SPSKHTASGHSGVSGATGGVCKHTPSSSSATTVAASSSSSSSAVALAGEEVAHQAELNPV
QNSSAGEGPAETRQHVSDGPPSSNDQQNETAPFKLEATVPSRLALGTRCGYSQRCWGSPV
RQKKKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWAATSWGRGQDSDSISSSSSDSLGS
SSSSGSRRAGGGARAKSTDTSRYKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAGG
NSSTSIFTQPSASGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQ
AMEIGSAALNILVECWDGHLTPPEVASLADRASRARDPNMVRAAAELALSCLPHAHALNP
NEIQRALVQCKEQDNVMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQSVGGGSGQ
QRETSGRCGANGGSGRRLPESTCVVLDSGANMESPGMATVTASVTAAAVVPVISVGSTIY
QSHPMPGQAMAHPHSQGLHPYTTIQAHLPTVCTPQYLGHPLQHVPRPTVFPVSGAAYPQG
MHPAFIGAQYPFSVATGPQPPMAATAVTFPGVPVPSMTQIAVHPYHTETGLPLSTTVAVG
SVHTGPTIQAIQGASLPSLSSQPGSLVTPFPAEDEQHSQPISQQGLHYLHSAYRVGMLAL
EMLGRRAHNDHPNNFSRSPPYTEDVKWLLGLAARLGVNYVYQFCVGAAKGVLSPFVLQEI
IMEALQRLNPAHIHAHLRTPAFHQLVQRCQQAYLQYIHHRLIHLTPADYDDFVNIIRSAR
GAFCLTPVGMMQFNDVLQNLKRGKQTKELWQRISLEMATFSP
NT seq
5889 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatgttcgccgagtgggaggatggggagaggttctccttcgaagactcggac
cggttcgaggaagactctctgtgctccttcatctcagaggccgagagcctctgtcagaac
tggaggggatggaggaagcagtccgccggacccaactccccaactgtcaagattaaagat
ggccaggtgattccactggtggagttgtcagcgaagcaggtagcattccacatcccgttc
gaggtggtggagaaggtctacccccctgtcccagaacagcttcagctccgcatcgcctac
tggagcttccccgagaatgaggaggacatcaggttatattcttgcctggctaatgggagt
cccgatgaattccaacgtggagagcagctctacaggatcagagctgtcaaagaccccctg
cagatcggcttccacctgagtgctacagtggtgtccagtcaggccggtcaatctaaagga
gcctacaacgtggctgtcatgtttgatcgctgccgcatcacttcctgcagctgcacctgt
ggtgctggggccaaatggtgtgcccatgtggtggcactctgcctcttcaggatccacaat
gcatcagcagtgtgtctgagggctccagtctctgagtctttatccaggctgcagagggac
cagctccaaaagttcgcccagtacctcatcagtgagctgcctcagcagatcctacccaca
gctcaacggctgctagatgaactgctgtcctctcagtctactgccatcaacaccgtgtgc
ggagctccagaccccactgcaggcccttcagcgtctgaccagagcacttggtatttggat
gagtcgaccctgagtgacaacatcaaaaagacactgcacaagttctgtgggccttcacct
gtcgtcttcagtgatgtaaactccatgtacctgtcgtccacggagccaccagccgccgct
gaatgggcgtgtctgctgcgacctctgaggggcagagagccagaaggcatctggaacctt
ctgtccatcgtcagggagatgttcaagagacgagacagcaacgctgccccgcttcttgag
atcctcactgagcagtgcctcacctacgaacagatcatcagctggtggtacagtgttcgg
acctcagcgtcccacagcagtgccagtggccatacggggcgcagcaatggccagtcagag
gtggcggctcatgcctgtgccagcatgtgtgacgagatggtggtgctctggaggctggca
gtgctcgaccccactatgagcccctgcaggcgcctggaactgtcaggtcagctgaagcag
tggcacctgaaagttatagagatagtgaagcgaggacagcatcgcaagtccctggataaa
ctgttccagggcttcaagcccgccgtggagtcctgctttttcaactgggaggtggcctac
ccgctggagggcatcacttactgcagcgctgataagaagagcgccacattctgctggtcc
agggcagtgcagctccagagaggagccaaagctgctgcaggagggggtggagaatcttct
gaaccagggggaggggtgagagttgaaggtggagctgggggggattataaaggtagagga
agtggtcactcgtcccaacaggaggtggcagtgcgacccaaggaaaccatactgaccaag
aggaagggtctgtcagtgagcggagggggagggatgctggtccgtctgggagggagcgtc
tctctgtccctggaagacggaggagggaagtgcatgtacaaagggccaggctcctcctct
ggagggaaactgaaactgacacagggaggtgggaagggggcatctgtaggagggcccgga
ggaagtggaggcntaggaggtggtaagcatgccaacgccaagcggagaaccagcagtgaa
gacagctccctggagccagacctggctgagctcagcctggatgatggctgcagtctggct
ctgggggctgaggccagcaacacttttgagtttctccctccaccgccagagatgttgccc
tccccaagtccactgctccgagactcacgcaagtacagcagcagcaacggggggggcaag
atgtttgaaacgaagcatgtcggccatgcctcagctggacttcctgctgcggagcctgct
ccaccttgtttccctccaaaagagacagtgccggttgttatggacatacctggtgctgca
gagctggcggtggagcctgtccagaacagagaggaagatgtagactcggcaggcagtacc
cagccttccacttccaccactacagctagatcagggaccactcaaccgtctgccaagcca
ccgcggagccgcagagaggcggcgtttgctgcaccagcagcaggaagcggggcagcagct
gcaggtggactagctaaccaaggagcagaggcagcaggtggagctgcaggaggagaatcc
gtgggtgaggatgactatcaggcatactacctgagtgctgcctcagaggagggagcagac
agacagctggctgacaaccaccaggaggaggagccagacatctttgcagggatgaaaccg
ctggagcaggaggggcgcatggaggtgctgtttgcttgtgcagaggctctacatgctcat
ggctacagtaatgaggcatgccggctagctgtggagctggccacagacctgttagccaac
cctccagacctgaaagtggagcagccgcagactaagggtaagaagagcaaggtgtcaacc
acccgtcagacgcaggtagccactaacacactgtccaaagccgccttcctcctcactgtc
ctcagtgaacgactggagctccacaacctggccttcagcaccggcatgttctccctggaa
ctccagagaccaccggcatcaaccaaagctctggaggtgaagctggcctaccaggagtcg
gaggtggtggctctgttgaagaagattcctttgggcctggtggagatgtcagccatcaga
gagcgagccgagcagctcagagacggaaacttctgtgattacagacctgtgctgcctctg
atgctagccagcttcatctttgatgtactgtgtaccccagttgtgtccccaacgggttcc
cgtccgccaagccgcaaccgtaacaacgagatgcctggcgatgaggagctgggcttcgag
gctgctgtcgctgcactcggtatgaagaccacagtaagtgaggcggagcatcctctgctg
tgtgaaggaactagacgggtgaagggtgacctggctctggctctcatgatcacctataag
gatgaccagagcaagctcaagaagatactggataagttgttggacagggagagtcagacc
cacaagccccagaccctgagctccttctactccagcaagccagcagctggcagccagcgc
agcccatccaaacacactgcctctggacacagtggggtgagcggggccaccgggggtgtc
tgcaaacacacaccctcctcttcgtctgcgaccactgtagcggcctcgtcttccagctct
tcctctgccgtggcactggctggtgaagaggtggctcatcaggctgaactgaacccagtg
cagaacagttcagcaggggaaggtcctgctgagaccaggcagcatgtatcagatgggcct
ccgtcatccaatgaccagcagaatgaaacagctccatttaagctggaggccactgtgccc
agtcggctggcgctggggacccgctgtggatacagccagcgttgctggggctcacctgtc
cggcagaagaagaagcacaccggcatggcgagtatcgacagcagtgctccggagacaacc
tcagacagttcgcccactctcagccggcggccgctccggggcggctgggcagcaacctcc
tgggggcggggccaggacagtgacagcatcagcagttcatcgtctgattccctgggctcc
tcctcctccagcggctctcgcagggcagggggcggggccagggccaagagcacagacacc
agcaggtacaaagggcgacgtccagagtgccacgccccccacgtgcccaaccagccatca
gaggcagcagcccatttttactttgagctggccaagacggtgctgatcaaagctggaggg
aactcctccacctccattttcacccagccctcagccagtgggggccaccaggggccccac
agaaacttgcacctgtgtgcctttgagattggcctgtatgctcttggcctccacaacttt
gtctcacccaactggctgtccaggacctactcctcccatgtgtcttggatcactggccag
gccatggagatcggcagtgctgccctcaacattttggtggagtgttgggacggtcacctc
acccctccggaggtggcatccctggctgaccgagcatctcgggcccgggaccccaacatg
gttcgggcggcggcagagctggccctgagttgcctgcctcacgctcacgcccttaatcct
aatgaaatccagagagccctggtgcaatgcaaagagcaggacaatgtgatgctggagaag
gcctgcatggcggtagaggaagcagccaagggtggaggtgtgtaccctgaggttctcttt
gaggtggctcaccagtggtactggctgtatgagcagtcagtgggcgggggctcaggccag
cagcgagagacctctgggcgctgtggggccaacggcggttcgggcaggaggctcccagag
tccacctgtgttgtcctcgacagcggagccaacatggagtctccggggatggcaacagtc
acagcctcagtcactgccgcagccgtcgtacccgtcatctctgtaggctccaccatctac
cagtcccatccgatgcccgggcaggccatggctcacccccacagccagggcctgcacccg
tacaccaccatccaggcccatctccccaccgtctgcaccccccagtacctgggacaccct
ctgcagcacgtcccccgacccaccgtcttccccgtgtctggggctgcatatccacaggga
atgcacccagccttcatcggtgcacagtacccgttctcagtggccactggccctcagcca
cctatggcagccacagctgtgaccttccctggcgtcccagtaccgtccatgactcagatc
gccgtccatccctaccacactgagacgggcctgcccctcagcaccactgtagcagtaggc
agcgtccacacgggccccaccatccaggccatacagggagcatctctgccctccctctcc
tcccagcctggctcattggtcactcctttcccagcagaggacgagcagcacagccagcca
atcagccaacagggcctgcactacctgcattctgcctacagagttggcatgctggcgttg
gagatgctgggcaggagggcacacaatgaccaccccaacaacttctccaggagtccacct
tacactgaggatgtcaaatggttgctaggactggctgcaagactaggagtcaactatgtg
taccagttctgtgtcggagcagctaaaggcgtcctcagtccattcgtcttgcaggagatc
atcatggaggctctacagaggctgaaccccgcccacatccacgcccacctccgaacacct
gcttttcaccagctcgtccagcgctgccaacaggcctacctgcagtatatccaccaccgg
ctcatccacctgacgcctgccgactacgatgacttcgtcaacatcatccgcagcgctcga
ggtgctttctgcctgacacctgttggtatgatgcagtttaacgacgtgctgcagaacctg
aagagaggcaagcagaccaaggagctgtggcagcggatctccctggagatggcaactttc
tccccctga
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integrated database retrieval system
