Micropterus salmoides (largemouth bass): 119917194
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Entry
119917194 CDS
T07309
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
119917194 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
msam04131
]
119917194 (vps8)
Membrane trafficking [BR:
msam04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
119917194 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
Clathrin
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-RING_UBOX
zf-RING_11
zf-RING_5
zf-RING_2
ANAPC4_WD40
Beta-prop_EML_2
zf-C3HC4
Beta-prop_WDR5
zf-C3H2C3
Beta-prop_WDR3_1st
WDR55
Beta-prop_HPS5
PHD_4
EIF3I
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
119917194
NCBI-ProteinID:
XP_038593280
LinkDB
All DBs
Position
Unknown
AA seq
1406 aa
AA seq
DB search
MSESPDARSLLSASSQLNLMEVDAIDDKEFDIPQVDTPPTLESILNELEDEEEPFVLEDT
CVLNTDNMDAHSCDTSSLASSDSGDPAHLKRKRRTVDPNATVHGSVVRHSLLKGISAQIV
SAADKVDAGLPTAITVSGVIAVGTSHGLALVFDANQALRLCLGTKATGAEFGAVSALSIN
HDCSRLLCGFAKGQITMWDLANGKLLRSINDAHPPGTAILHVKFTDDPTLAVCNDSGGSV
FELAFRRVMGMRSCDSRCLFSGSKGEVCCIEPLRAPPDFRDHPITHYSLLAMASLTKILV
IGLKPSLKVWMTFPYTKSDPSSVPQLAWQFVPVQKTVNPILAFCKGDTVHFLLVKKEETG
TIHVIKQRQLHLSCDIISLSWINSRTLVLVDSHEKLQVVDRPSQEVLETLDLEQVQLVYN
SRHFKSLATGGNVSQALALVGEKACYQSVSSYAGQIVYLGTKSAHIMALRTWRERLDCML
KQEHFVEALSLAWSFHEGTAKAVVGLFGDPVKRKGVVGDKMVEILFQFAEHALKKCPEQG
KIQVMEQHFHDVVPVLLDYCLLLQRPDLLFNQLYARLVENTVAKGVFLESLESYIVADRL
GHLTTPIMRDLLAHYQGNGMMDSLERCIVHLDVTSLDIQKVVQVCWENQLYDAMIYIFNS
GMNDYITPMEKLFAVIGPPLREGRSLTDEEVVMGNKLLVYISCCLAGRAYPLGDIPEDLV
VQVKNQVFEFLIRLHSADSSEEEEVFPFIRTLLHFDTREFLNVLAMTFEDFKNDKQALEY
QQRIVDILLQVMVENPDFTPSQVGGLFTFLARQLAKADNTLFVNRKLFDQVLEFLCCPDD
DSRHTERQQVLLELLQVGGVVQFNEGRLLALAEKAKFYQICEFLYEKKHLYDRIIDCYLR
DPLRKGEIFNYIHNLLSMPGYSPEEKQTVRVKVLQHIQMLVTLDPSKSADLVVFHFAEEV
QQIISELQNDQLLFKFLSCLLEPREGHHSGTILPLEHELHELLLDLMSRFAPKQLLSFLQ
TSQHYRLEEAIQITKKYHHNEATAYLLEKKGDFQGAFAVLLETLKDKLSLLTAESDGGVE
EENGGGNEEEGGSESTLTRVKDSLNDIIVLCHRSSQNLYQQQREVLWFPLLETMMASQKL
VKGSNAKHTFEVLKELTMKVLNCMSSFISLPAIIQRILQDPVYGKGKLAEIQGLILGMLD
TFNYEQTLLETTTSLLNHDLHWSLAHLRAAVTRGLHPRQDHCNICLQQYKRRHDSAEEII
VFSCGHLYHFQCLQQKDCGRGFASELQQRWSCYKCSSSSQRGRSGPSTETKRGRTTSLAQ
TRVTSVHHDAGAEANGKKLFVEATLDLQQEQSWDQLRCLYRGPSRLSILSELSHCHSNEK
TGLLMSAQPGTESFQLKLSPPPLLEE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtctccggacgcccgcagcctactctctgcatcctcccagctcaacctgatg
gaggtggacgcgattgacgataaagagtttgacattccccaagtggacacacctcccaca
ctggagagcatcctcaatgagctggaggatgaggaggaaccatttgtgctggaggacacc
tgcgtgctaaacacagacaacatggatgctcactcctgtgacacttcgtctctggccagc
tctgacagtggagacccagcacacctcaaacgaaagaggaggacagtggatccaaatgcg
acagttcatggctctgttgttcgacacagcctgctgaagggcatctctgcacagatcgtc
tctgctgctgacaaagtggatgctggactgccaactgctataacagtgtcgggtgtgatt
gctgtaggaacatctcatggcctggctctggtctttgatgccaaccaggctctgcggctc
tgtctgggtaccaaggcaactggggcagagtttggggccgtttccgccctcagcatcaac
catgattgctcacgacttctctgcggcttcgccaaaggacagatcacgatgtgggatcta
gccaatgggaagcttttgagaagtatcaatgatgcccaccctccagggacagctatactg
catgtgaagttcacagatgacccaactcttgcggtgtgcaatgacagtggaggatcagtt
tttgagctggctttcaggagggtgatggggatgcggtcctgtgactctcgatgtctcttc
agtggttctaaaggggaggtctgctgtattgaaccgttgcgtgctcctccagacttcaga
gaccatcccatcacacactactctctgctggctatggcctctcttactaaaattctagtc
attggactaaagccctcgctgaaagtctggatgacttttccctacactaagtctgatccg
tccagtgttcctcagctggcctggcaatttgttcctgttcagaagactgttaacccgatc
ctggctttttgcaaaggagatacagtccacttcctcctggtaaagaaggaggagacgggg
accatccatgtcatcaaacaacgacagctccaccttagctgtgacatcataagcctcagt
tggattaatagtcgtacactggtcctggttgacagccacgaaaagctgcaggttgtggac
cggcccagtcaggaggttttggagactctggacttggagcaggtgcaactggtctataac
agccgacatttcaaatcgctggctactggagggaatgtctcccaggctctggctttagtc
ggagaaaaggcctgctaccagtcggtctcgagctacgctggacagattgtctatttgggc
accaagtcagctcacataatggctctgaggacctggagagagcgtttagactgcatgctg
aagcaggagcattttgttgaggctctctcgctggcctggtccttccatgagggaactgct
aaggctgtggttggcctgtttggagatccagtgaaaaggaagggagtggtaggtgataag
atggtagagatccttttccagtttgcagagcacgctttgaagaagtgtccagaacaaggc
aagattcaagtgatggagcaacatttccatgatgtggttccagtcctgctggattactgc
ctgctgctacagaggcccgacctgctgttcaaccagctgtatgctcggctggtggagaac
acggtggctaagggtgtctttctggagtcactggagtcatacattgttgcggaccggctc
ggtcacctcaccacacccatcatgagggacctcctggcccattaccaaggcaatggtatg
atggacagcctggagagatgcattgtccatctggatgtcaccagcctggacatccagaag
gtggttcaagtgtgttgggagaaccaactctatgatgcaatgatctacattttcaacagt
ggcatgaatgactacattacacctatggagaaactctttgcagtgattggcccaccactt
agggaggggaggagcctaactgatgaggaagtggtgatgggaaacaagctgctggtgtac
ataagctgctgtcttgcaggcagggcatatccactgggagacatccctgaagatcttgtg
gttcaagtcaagaaccaggtgtttgagttcctaatccgtctccattcagccgactcgtca
gaggaggaggaggttttcccatttattcgtacactccttcactttgatacccgggagttc
ctgaatgtcctcgccatgacgtttgaagactttaagaacgacaagcaggcccttgagtac
cagcagaggatagtggacatcttacttcaggtgatggtggaaaacccagactttacacct
tcccaggtgggcgggctcttcacctttttggctcgccagttggccaaggcagacaacacg
ctttttgtgaacaggaagctctttgaccaggttcttgagttcctgtgttgtccagatgat
gattcccgacacactgagaggcagcaggttctgctggagctgctgcaggtcgggggtgtg
gtccagtttaatgaaggaaggctgttggctttggcagagaaggcaaagttctaccaaatc
tgtgaatttctttatgagaagaaacatctgtatgacaggataattgactgctacctgaga
gaccccctcagaaagggggagatcttcaactacatccacaatctactgtccatgccaggc
tacagcccagaggagaaacaaacagtcagggtcaaagtactgcaacacatacagatgcta
gtgacccttgacccgagcaagtcagctgacctagtggtgtttcactttgctgaggaggtg
cagcaaatcatctctgagcttcagaatgaccagctactattcaagttcctcagctgcctc
ttagagccacgggaaggccatcattcagggaccatcctgccactggaacatgagctccat
gagcttctgctggacttaatgagccgctttgcccccaagcagctcctgagcttcctccag
acatcccagcactacagactggaggaggccatacaaataacaaagaagtaccaccacaat
gaggctacagcctacctgctggagaagaagggtgattttcaaggcgcttttgctgtcttg
ttagagacattgaaggacaaactgagtctcctcactgctgagagtgacggaggagttgaa
gaagaaaacggaggaggcaatgaagaggagggaggcagtgaatcgaccctgacaagagta
aaggattcactgaatgacataattgtcttgtgtcatcgtagctctcagaacctctaccag
caacaaagagaggttctatggtttccacttctggagacaatgatggcttcacaaaaacta
gtgaagggaagcaatgccaaacacacctttgaggtgctgaaggagctgacgatgaaggtt
ctcaactgtatgagtagctttatttctctgcctgctatcatccaacgaatacttcaggac
ccagtctatgggaaaggaaagctggcagagatccaaggcctcattctgggcatgctggac
acttttaactatgaacagactttacttgaaacaaccacgagtctgttgaaccatgacctc
cactggtccctggcccacctacgcgctgctgtcacaagaggactccacccacggcaggac
cactgtaacatctgcctccagcagtacaaaaggaggcatgactcagctgaggagatcatt
gtgttcagctgtggccacctgtaccacttccagtgcctgcagcagaaggactgtgggcgg
ggctttgcttcagagctgcagcagcggtggagctgctacaagtgttcctcctccagccaa
agaggaaggagcgggccttccaccgaaacaaaaagaggccgcaccacgtccctggcacag
actcgtgttacatcagtgcatcatgatgcaggagcagaggctaatgggaagaagctgttt
gttgaggcaacgttggaccttcagcaggaacagtcctgggatcagctacgctgtctatac
cgaggaccatccaggttgtccatcctttcagagctctcccactgccatagtaatgagaag
acaggacttctaatgtcagcccaaccaggaacagagagtttccagcttaaactctctcct
ccacctctgttggaagagtag
DBGET
integrated database retrieval system
