Micropterus salmoides (largemouth bass): 119917274
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Entry
119917274 CDS
T07309
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
msam00536
]
119917274 (col13a1)
Glycosaminoglycan binding proteins [BR:
msam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119917274 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
DUF6526
Motif
Other DBs
NCBI-GeneID:
119917274
NCBI-ProteinID:
XP_038593425
LinkDB
All DBs
Position
Unknown
AA seq
674 aa
AA seq
DB search
MEEGQKWGVAGKPGEERTRGTQGSLKQPLWRNWRDLSGVTICVAVSVLCIGVCIVVFVRT
SELQSRIVSLEQQQRDAHLTAWMLSLEQVEPVILGQLDQILEEKLAARLPKTREMREAPQ
SCLCPPGPPGPPGRAGFPGDRGSMGIPGRMGLKGQAGEKGAPGEPGLSIIGPRGPPGQPG
TRGFPGFPGPIGLDGKHGQNGPKGDMGQRGPRGLAGEPGPKGEKGICGDFTHRKRRIVQP
CGGQLATQGEPGMQGPPGPPGPPGPPGTPGLNGASGPPGKSGEPGKPGKDPRLLPGLKGE
PGVPGQKGDRGDVGPPGPEGPKGVKGDQGIKGEAGFPGAPGLKGQAGIPGTPGIPGKRGY
RGDKGDQGDKGEIGPEGSTGPRGPAGPTGEPGKAEIHNNENDIRNIPLMGPPGLPGLPGP
PGLPGTKGEVGLPGSPGLDGEKGPRGKPGEPGPTGLVGPEGPKGPKGESGVIGFPGPKGD
MGPPGSPGPKGEPGEGGRSEMVKIYGPQGPPGPPGPVGPAGSQGLPGPKGEPGMGIRGEK
GATGQKGEKGDKGHLGLPGAHGLDGSPGPVVPGPAGMPGPAGPKGERGERGDVGLPGPIG
PQGIPGLAGPQGLKGNRGFRGFKGEKGEPGLPGLDGLDAPCPVVWCSFLPFIFPSMPLAI
LNLTPDYGHSEVAL
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaagagggtcagaagtggggagtcgctggtaaaccgggtgaagagaggactcgcggc
acgcagggatctttaaaacagcctctgtggaggaactggagagatttgtctggcgtaacg
atttgcgttgcagtatctgttctgtgcattggagtttgcattgtggtttttgtgcggacg
tcggagttgcagtccaggatagtaagtctggagcagcagcagcgggacgcacacctcacc
gcgtggatgttgtctttggaacaggtggagcccgttatcctgggccaattggaccagatc
ctggaggagaagcttgcagcgcgactaccgaagacacgggagatgagagaagctccccaa
agctgcctgtgtccccctggacctccaggtcctcctggacgagcaggctttccgggtgac
agaggaagtatgggtattcctggaagaatgggcttaaaaggacaagcaggggagaaggga
gcaccaggcgagccaggtctgtctatcattggaccaagaggacctcctggacaacctgga
acaagaggatttccaggctttccaggtccaattggattggatggcaagcatggacagaac
ggaccgaagggagacatgggtcagcgtggtcctagaggacttgcaggggaacctggaccc
aaaggggagaagggcatatgtggagacttcacacaccggaagcggcgtattgtacagccc
tgtggtggacagttggccacacagggcgagcctggcatgcagggacccccaggacctcca
gggcctcccggtcccccagggaccccaggcctgaatggagccagtggcccaccaggtaag
tctggtgaaccaggcaaaccaggaaaagacccaaggcttttaccaggactgaagggtgag
ccaggtgtgccaggacaaaagggtgatcgaggtgatgtcggcccaccaggtcctgaaggg
ccaaagggagttaagggagaccaaggaattaagggagaagcaggtttcccaggcgctcct
gggttaaagggtcaggctggcatccctggtaccccaggcatccctggcaagaggggctac
aggggtgacaaaggcgaccagggagataagggggaaataggtcctgaaggctcaactgga
ccaagaggtcctgcaggcccaactggggagccaggaaaggctgaaatccacaacaatgaa
aatgatattcgcaacatacctctgatgggcccccctggattacctggacttccaggacct
cctggactccctggtaccaagggtgaagttggtctaccaggttctccaggactggacgga
gaaaagggacccagagggaagcctggagagcctggtcccacaggcctagtcggtcctgaa
ggtcctaaaggtcctaaaggggagagtggtgtcattggcttcccgggacctaagggagac
atgggtccacctggatcacctggtcccaaaggagaacctggagaaggaggaaggtcagaa
atggtaaagatctatggtcctcaagggcctccaggacctccaggaccagttggcccagca
ggatctcaaggacttccagggcctaagggagaaccaggcatgggcatcagaggagaaaaa
ggagcaacaggtcagaaaggcgaaaagggagacaaaggccatcttggactccctggggct
catgggttagacggcagtccgggtccagtggtgccagggccagcaggtatgccagggcca
gcaggaccaaagggagaaagaggtgaaaggggagatgtgggattacctggaccaattgga
ccacaaggcatccctggtttagcaggaccacaaggactcaaagggaaccggggtttccga
ggctttaaaggggagaaaggtgaaccgggcttgccaggcctggacgggctggatgcccct
tgccctgtggtatggtgctctttccttcccttcatttttcccagcatgcctctagctatc
cttaacctcacccctgactatgggcactcagaagttgcactgtag
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