Micropterus salmoides (largemouth bass): 119918401
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Entry
119918401 CDS
T07309
Symbol
cnot4b
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119918401 (cnot4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msam03000
]
119918401 (cnot4b)
03019 Messenger RNA biogenesis [BR:
msam03019
]
119918401 (cnot4b)
04121 Ubiquitin system [BR:
msam04121
]
119918401 (cnot4b)
Enzymes [BR:
msam01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119918401 (cnot4b)
Transcription factors [BR:
msam03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
119918401 (cnot4b)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119918401 (cnot4b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119918401 (cnot4b)
Ubiquitin system [BR:
msam04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119918401 (cnot4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_2
zf-UDP
zf-RING_2
Med7
zf-C3HC4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
119918401
NCBI-ProteinID:
XP_038595066
LinkDB
All DBs
Position
Unknown
AA seq
804 aa
AA seq
DB search
MSRNPEVKDDLMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKAY
PEDPAVYKPLSQEELQRIKNEKKQKQNEKKQKITENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKMNPTFLQTSAVAGDKLKGKANSLQRSNSSSKDGWLSLQPPGRMSNGLSSDHGKS
PPLDGSDPEHLTPEGPEPDLSLGPVQALSPFSSNCDLASPSKTLPDIISMGNGETSQLVQ
SSDSPSPPPGLIKPSLAVPISVTVHAVRSPFELAAAESQSLFSDNSNFRHPNPLPSGLSG
FLSSPDSNADWPTAPEPQSLFTSDTIPVSSSTDWQAAFGFGSSKQQQEDDLGFDPFDITR
RALADLIEKELSVEDRFSSPLSPGSFPHRTHRPLLNKGLGTPGGLPLPNHLPPFHHTSQH
QHPQRGGYSFSFPTHPSSSSCSSSSSSCGSWMGSTSSRSNFVHLNHTACPTTSHSSFLDL
TVLPGHHSTGLGGLPITENSSCVESISVKEWQEGLRALLPNININFGGLPNSSSSSSSSS
SSVNHTGTLGVSGNVSHSLCWDGTASWMDPAIIRGIPASSGHSLDSLQDDNPPHWLKSLQ
TLTEMDAPSCSASQNGRFESQPSPHRGGWAHYPAPTNLFHSPPPGFQTAFRPPTQTQTDL
LQSDAIMSTHTHRRTHITTSNQTE
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggaaccctgaggtgaaggacgacctgatggagtgcccactatgtatggaacca
ctggagatcgatgacgtcaacttcttcccctgcacctgtggataccagatctgccgcttc
tgctggcatcgaatcagaacagatgagaatggtctctgtcctgcctgcagaaaggcgtac
ccagaagacccagcagtgtacaagccgctgtcacaggaagagctgcagagaataaagaac
gagaagaagcagaagcaaaatgagaagaagcagaagatcacagagaacagaaaacacctg
gccagtgtccgagtggtccagagaaacctggtgtttgtagtggggctgtctcagaggctg
gccgaccctgaggttctaaagaggccagaatattttgggaagttcgggaagattcacaaa
gtagtgatcaacaacagcacgtcgtacgccggttcacaggggcccagcgccagtgcctat
gtcacatatatccgttctgaagacgctctcagagctatccagtgtgtcaacaatgtggtg
gtagatggcagaacgcttaaggcttctttaggaacaacaaaatactgcagttacttttta
aagagcatgcagtgccccaaacccgactgcatgtatctacatgaactgggggatgaagct
gccagtttcacaaaagaggagatgcaggcgggaaagcatcaagagtatgagcagaaacta
ctacaagacctctacaaaatgaatcccactttcctacagacctcagctgtggcaggggac
aaactaaagggcaaagcaaactctctacagaggtctaacagctccagtaaagatggatgg
ctgtcattacagccgccagggaggatgagcaacggtctgtcttccgaccacgggaagagt
ccgccgttggatggctcagaccctgaacacttgacccctgaggggcccgaacctgacctc
agccttggccctgtacaggccctctctcctttctcctcaaactgtgaccttgctagcccc
agcaagacactgccagacatcatcagtatgggcaacggtgaaacctcacaactggtccag
agcagtgactctccatcgccccctcctggcttgattaagcccagcctggcggttcccatc
agtgtcacagtccacgcagttcgctccccctttgagctggctgctgcagagtcccagtca
ctgttctcagacaacagtaacttcaggcatccaaacccgctccccagtggactgagcggc
ttcctcagctccccagacagcaacgccgactggcccactgcaccagagccacagagcctc
ttcacctcagataccatcccggtgtcgtcgtccacagactggcaggcagcgtttggcttt
ggctcgtccaaacagcagcaggaggacgacctgggtttcgaccccttcgacatcactcgc
agggctctggcagacctcatagagaaggagctctctgttgaagaccgcttcagctcccct
ctgtcacccggctccttcccccacagaacccacaggccccttttaaacaaaggcctcggg
accccaggggggctcccactgccaaaccacctcccgccctttcaccacacctcccagcat
cagcatcctcagaggggaggctacagcttcagctttcccactcacccttcatcctccagc
tgctcctcctcatcgtcatcttgtgggtcctggatgggttccacctcatcacgtagtaac
tttgtgcatttgaaccatacagcctgtccaacaacctcacacagtagcttcttggacttg
acagtgctgcccggacatcacagtactgggcttggaggactccccatcacagaaaacagc
agttgtgtagagagtataagtgtgaaagagtggcaggagggactcagagcactgttaccc
aacatcaacatcaactttggaggactgcccaactcctcgtcttcctcatcgtcatcatcc
tccagcgtcaaccatacggggacactgggggtttctgggaatgtttctcacagcctctgc
tgggatggcacagccagctggatggacccagccatcatcagagggatcccagcctccagt
ggccacagtctggactctcttcaagatgacaatcctccacactggctcaagtccttgcag
acactcacagaaatggatgccccgtcctgctccgcctcacaaaatggccgctttgagagt
cagccatccccccacagaggtggctgggcgcactacccggcccccaccaacctgttccac
tccccaccaccgggcttccagacagccttcagacccccaacacagacccagacagacctg
ctacagagcgacgctatcatgtcaacacacacacacagacgcacacacatcaccacctcc
aaccaaacagaatga
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integrated database retrieval system
