Micropterus salmoides (largemouth bass): 119919222
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Entry
119919222 CDS
T07309
Name
(RefSeq) embryonic polyadenylate-binding protein A-like
KO
K13126
polyadenylate-binding protein
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03015
mRNA surveillance pathway
msam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119919222
09123 Folding, sorting and degradation
03018 RNA degradation
119919222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119919222
03041 Spliceosome [BR:
msam03041
]
119919222
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119919222
mRNA cycle factors
Stress granule specific factors
119919222
Spliceosome [BR:
msam03041
]
Complex C
Other components
Complex C specific factors
119919222
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RBD_DEAH11
RRM_5
RBD_RDR6
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
119919222
NCBI-ProteinID:
XP_038595586
LinkDB
All DBs
Position
Unknown
AA seq
653 aa
AA seq
DB search
MNSSGQAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDERGSKGYGFVHFETHEAANRAIDTMNGMLLNDRKVFVGHFKSRKERE
VEFGTKAMKFTNVYIKNFGEDYTDEKLKEVFSVFGRTLSVRVMKDERGRSRGFGFVNYAN
HEDAQKAVDEMNGKDINGKIIYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKN
LDDSIDDERLRKEFAPYGTITSAKIGRHFSILMAHKVKSPSAFCLQAFRFQVMTDGSQSK
GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRLATLRSMT
SPIIDSYQQAGYYMTVPQPPTRSFYNHNAVSNMRPVPRWTGQPPRLQGPYTTQFVGSSVP
RRGTNPIATVRQASTQAPRIISSTQKTNNIGTQTVGGRTDMPGGTRSSQYKYASAVRNVQ
QVITIPAPMTRVQVVPAPMMEQLVHIQAQEPLTASMLAAAPLMDQKQLLGERLYPLIHAL
HPNLAGKITGMLLEIDNTELLHMLDSPESLQSKVDEAIAVLQAHQVKECSPKK
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggacaagcatatcccctcgcttctctgtatgtgggggacctgcatcct
gatgttacagaggccatgctctaccagaaattttctcctgctggacccatcatgtcaatc
cgtgtgtgccgcgacatcatcacacgcagatctctgggatatgcctacattaacttccag
caaccagctgatgcggagtgcgccctggatacaatgaactacgacgttatcaaggggcgg
cctatccgaataatgtggtctcagcgtgacccgggactcaggaagtctggtgtgggaaac
atcttcatcaagaacatggatgaatctattgacaacaaggcactgtatgacaccttctca
gcctttggcaatatcttgtcctgcaaggttgtttgtgatgagagaggatccaaaggctat
ggctttgttcactttgagactcatgaggctgcaaaccgggccattgacaccatgaacggg
atgctgctgaatgataggaaagtttttgttggccactttaaatcccgcaaggaaagagag
gtggagtttggcaccaaagctatgaagtttaccaatgtctacatcaaaaactttggtgaa
gactacactgatgagaaactcaaggaagtcttttctgtatttgggaggactctcagtgtg
cgagtgatgaaggacgagaggggtcgttcacgaggatttggctttgtaaactatgctaac
cacgaggatgctcagaaggcagttgatgaaatgaatggaaaggatatcaatgggaaaatc
atctatgtaggccgggctcagaagcgtctggagcgccagggagagctcaagcgcaagttt
gaccagatcaaacaggaccgcatccaacgctatcagggggtgaatctgtatgtgaagaac
ttggacgatagcatagatgacgagagactccggaaggagtttgccccttatggcaccatc
acaagtgccaagattggcagacatttttcaatacttatggctcacaaagtcaagtcccct
tcagctttttgtcttcaggcattcaggtttcaagtcatgacagatggctcccaaagcaag
ggctttggctttgtctgtttctcttcacccgaggaagcaacaaaagcagtaactgaaatg
aacgggagaattgttgcaaccaagccactgtatgtggctctggctcagcgaagggaggag
cgtaaagccatcctgaccaataaatacatgcagagacttgctaccttgaggagcatgaca
agtccgatcattgactcctaccagcaggctggatactacatgactgtaccacagcctccc
actcgctccttctacaaccacaatgctgtcagcaacatgagaccagtccctcgttggaca
ggacaaccaccgagactacagggcccctacacaacccagttcgttggtagttctgttcct
cgacgtggaacgaaccctatcgctacagtcagacaggcttccacccaggctccacgcatc
ataagctccacacaaaagacaaataacatcgggacccagactgtaggagggcgtactgac
atgcctggtgggaccagaagcagccagtacaagtacgcgtctgcagtaagaaacgtccag
caggtcattactatacctgcacccatgacaagagtgcaggttgttcctgcacctatgatg
gagcagctggtgcacattcaagcccaagagccgctcactgcctcaatgttggctgcagct
cctctcatggatcagaaacagcttcttggggagcgattgtacccactgatccatgccctt
cacccaaacttggctggaaaaatcactgggatgctgctggagatagacaacacggagctg
ctgcacatgctggactcgcccgagtcccttcagtctaaggtggatgaggcgatcgctgtc
ctgcaggctcaccaggtgaaggaatgctctcctaaaaagtga
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