Marinobacter salinisoli: LPB19_03155
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Entry
LPB19_03155 CDS
T09746
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
msan
Marinobacter salinisoli
Pathway
msan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB19_03155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msan03019
]
LPB19_03155
03016 Transfer RNA biogenesis [BR:
msan03016
]
LPB19_03155
Enzymes [BR:
msan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LPB19_03155
Messenger RNA biogenesis [BR:
msan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPB19_03155
Transfer RNA biogenesis [BR:
msan03016
]
Prokaryotic type
tRNA degradation factors
LPB19_03155
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
QSP95434
UniProt:
A0ABX7MTE1
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All DBs
Position
690289..692277
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AA seq
662 aa
AA seq
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MLNADALSQLRQLKSDIKDNKVVFPGTVKATNGRFGFVALDEGRDLFLPPEEMQKVLPGD
RINVTEHEVDKGKTQGVVDELVSSRLSRFVGRYQIKGKGHFVVPETPGINRWIFIPPKER
KAAQPDDYIYCEIHRHPIKDGKAQAKVLRVIGKAGEPGIERSMTLATFDLADTFPDSVAQ
HAEQLTEQAIEERLAGRTDLTDRPYVTIDSPGTQDMDDALLAEPNATGWTVSIAIADPTA
MIEPGSATEQEALKRATAIYFPGEPLPMLPDSLSTRLCSLVPGEKRLALVCDLQVNNDGS
LGEYSFHSAIIRSQRKLSYELVANLIDGREDDDINALPDAVANSLDQLHQAATVLRKWRD
ENALLSADRPEFRLRLDENKRIRQIEPALQTEAHRLVEECMVAANRCAADFLSQTPSGLF
IQHPGVRDDRLDNIRALLQAHAPKLSEVDIASPAGFRQLMRDTEALDAEVPVKAIVSRQL
ARAELRPQPAPHQGMGLDAYTTFTSPLRKFSDFYVHRLIKAALWDAPIKALSAEQLEQLQ
QAQIRARQAANSLEAWLKSDFARTLGEEPMPGTISRTVPAGFFVRLDANGLEGFVSCKGL
DGKYGFDPVTLRLVHNKNGRIFQLEQVVSVRFAGVDEDKRQINFSLESAEEIQPAAGTEP
AG
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgctcaatgccgacgccctcagccagttgcgccagctaaaatccgatatcaaggacaac
aaggttgttttcccaggcaccgtcaaggccaccaatggacgcttcggttttgtcgcactg
gatgaagggcgggatcttttcctgccccccgaagaaatgcagaaagtcctgcccggggac
cggatcaacgtcaccgagcatgaggtggacaaggggaaaacccagggcgtcgttgacgag
ctggtgtccagccgcctgagccggtttgtcggccgctaccagatcaagggcaagggccac
tttgtggtgccggagacgccaggcatcaatcgctggattttcattccgcccaaggaacgc
aaagccgcccagccagacgactatatctactgcgagatccaccgccatccgatcaaggac
ggcaaagcccaggccaaggttctgcgggtgatcggcaaggccggtgaaccgggcattgag
cgatccatgaccctggccacctttgatctggccgacacgttcccggattccgtggcacag
cacgccgagcaactcaccgagcaggccatcgaagagcggcttgccgggcggaccgatctg
accgaccgcccctacgtcaccatcgacagcccgggcacccaggacatggacgatgccctg
ctggcggaacccaatgccacgggctggaccgtgtccatcgccatcgccgacccgaccgca
atgatcgaaccgggcagcgccaccgagcaggaagccttgaaacgggccaccgcgatttat
ttcccgggcgagccactgccgatgctcccggacagcctcagcacccgactgtgctcgcta
gtgccgggcgagaagcgcctggcgctggtgtgcgacctgcaggtcaacaacgacggcagc
ctgggagagtacagtttccacagtgcgatcatccggtcgcagcgcaaattgagttacgag
ctggtggcgaacctgattgatggccgcgaggacgacgacatcaacgccctgccggacgcc
gttgccaacagcctcgatcagctgcaccaggcggccacggtactgcgcaaatggcgcgat
gaaaacgccctgctgagtgccgaccgtccggaattccgtcttcggctggatgaaaacaag
cggatccgccagattgaaccggccctgcaaaccgaagcccaccgcctggtggaagagtgc
atggtcgcggccaaccgctgcgcggcggattttctgagccagacgccctcaggcctgttc
atccagcacccgggcgtgcgggacgatcgcctggataacatccgcgcgctgttgcaggcg
cacgccccgaaattgtccgaggtcgacattgccagcccggccggcttccgccagctgatg
agagacaccgaggcgctcgatgccgaggttcccgtgaaggccattgtctcgcgccagctg
gcgcgcgccgaactgcgcccgcagccggcaccgcatcagggcatggggctcgatgcctac
accacgtttacctcgccactgcgcaaattctccgacttctacgtgcaccgtctgatcaaa
gccgcgctgtgggatgccccgatcaaggcactgtcggccgagcaactggagcaattgcag
caggcccagattcgtgcccgtcaggccgccaacagcctggaggcctggttgaagagtgat
ttcgcccggacactgggcgaggagccgatgccggggaccatcagccgcaccgtgccggcc
ggcttcttcgttcgcctggacgccaacgggctggaaggctttgtcagctgcaaaggcctg
gacggcaaatacgggttcgacccggtcaccctgcgcctggtgcacaacaagaacggccgg
attttccagctcgagcaggtggtcagcgtgcgctttgccggggtggacgaggacaaacgt
cagatcaacttttcgctggaaagcgcggaagagattcagcctgcggcaggcaccgaaccg
gctggttga
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