Marinobacter salinisoli: LPB19_03350
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Entry
LPB19_03350 CDS
T09746
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
msan
Marinobacter salinisoli
Pathway
msan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB19_03350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msan03019
]
LPB19_03350
Enzymes [BR:
msan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB19_03350
Messenger RNA biogenesis [BR:
msan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB19_03350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
P-loop_SecA
CMS1
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
QSP95467
LinkDB
All DBs
Position
complement(731113..732420)
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AA seq
435 aa
AA seq
DB search
MSFSSLGLSEQLVRATSDQGYDTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL
QRLAEQPRTGKGPRALILAPTRELAAQVHDSVNLYSKYIPTKAAVVFGGVKINPQMMKLR
KGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQN
LLFSATFSNEIRTLAQGLLDNPVQVEVAARNTTAERVKQSVYPVDQSQKTALLSKLVRDN
SWEQVLVFTRTKHGANRLTQKLERDGITAAAIHGNKSQGARTRALSEFKQGDIRVLVATD
IAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKLLAGIEKL
IKKQLPRTVVDGFEPVNNLPLKPKAKADPSKARKRPGGSNGKPRSTSAKPGGRSGNRGNG
NGGGGQRGRGQRASA
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcttcactcggtttgtccgagcagctggtccgtgccacttccgatcagggt
tacgatacgccgtcgcccatccaggcccaggcgattcctgcggtattgtccggcaaggac
gtcatggctgcggcccagaccggcaccggcaaaaccgccggctttaccctgccgttgctc
cagcgcctggcggaacagccgcgcaccggcaagggcccccgcgccctgattctggcgccc
acccgggagctggcggcacaggtgcacgacagtgtgaacctgtacagtaaatacattccc
accaaggccgccgtcgtgttcggtggggtgaaaatcaatccccagatgatgaagctgcgc
aaaggtctggacgtgctggtggcgacaccgggacggctgatggacctgtaccagcaaaac
gcggtgcggttcaacgaagtggaaatcctggtcctggacgaagcggaccggatgctggac
atgggctttatccgcgacatccgcaagatcctcgcgctgctgccggccaagcgacagaat
ctgctgttctcggcgacgttctcgaacgaaatccgcaccctggctcagggtttgctggac
aacccggtgcaggtggaagtggcagcccgcaacaccaccgcagaacgcgtcaagcagtcg
gtgtacccggtggatcagagccagaaaaccgcgctgctgagtaaactggtccgcgataac
agctgggagcaggtgctggtgttcacccgcaccaaacacggcgccaaccgtctgacccag
aagctggaacgcgacggcatcaccgctgccgccatccacggcaacaaatcccagggcgcg
cgtacccgggccctgagtgaattcaagcagggcgatatccgtgtcctggtggccaccgac
attgccgcccgcggcctggatatcaagcagctgccgcaggtggtgaacttcgagctgccg
aacgtaccggaagattacgtgcaccggattggtcgcaccggccgtgccggcgaaagtggc
cacgccctgtcgctggtcagtgccgacgagggcaaactgctcgcgggtatcgaaaagctg
atcaaaaagcagcttccgcgcaccgtggtggacggtttcgaaccggttaacaatctgccg
ctcaaacccaaggccaaagccgatccgagcaaggcgcgcaagcgccccggaggaagtaac
ggcaaaccgcgcagcaccagcgccaagcctggaggccgaagcggtaaccggggtaatggc
aatggcggtggcggccagcgtggtcgcggtcagcgcgccagtgcctga
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