Marinobacter salinisoli: LPB19_06260
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Entry
LPB19_06260 CDS
T09746
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
msan
Marinobacter salinisoli
Pathway
msan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LPB19_06260 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msan03021
]
LPB19_06260 (rpoB)
03400 DNA repair and recombination proteins [BR:
msan03400
]
LPB19_06260 (rpoB)
Enzymes [BR:
msan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LPB19_06260 (rpoB)
Transcription machinery [BR:
msan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LPB19_06260 (rpoB)
DNA repair and recombination proteins [BR:
msan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LPB19_06260 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QSP95990
UniProt:
A0ABX7MX09
LinkDB
All DBs
Position
1379840..1383919
Genome browser
AA seq
1359 aa
AA seq
DB search
MTYSYTEKKRIRKDFSKLPSVMDVPYLLSIQLDSFRDFLQMEAAPEDRRETGLHAAFKSV
FPIVSYSGNAALEYVSYRIGEPVFDVKECQLRGVTYAAPLRVKVRLIIYDKESSNKAIKD
IKEQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARV
IPYRGSWLDFEFDPKDSVFVRIDRRRKLPATILLRGLGFTSEQMLEMFFDTSKFTLGAET
CKLELVPSRLRGDIATFDIKDQKGNVIAEEGRRITARHIRQLEKAGINELDVPTEYLHGR
VLAKDMVDSKTGEVLAECNSELTAELIEKLLDAGITEIETLYTNDLDCGPFMSDTLRIDP
TRTPLEALVEIYRMMRPGEPPTKESAENLFTNLFFSDERYDLSGVGRMKLNRRLGREDST
GPGILTNEDIIDVLKTLINIRNGQGQVDDIDNLGNRRVRCVGEMAENQFRVGLVRVERAV
RERLSLAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARSNSYGFLESPYRKVV
EGVVTDEVVYLSAIEESNYVIAQASAAMDEESRRLTDELVTVRHQNEFTVMPPESVNFMD
VSPRQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLRSQVPLVGTGVERTVAQDSGV
CVTARRGGVIESVDAARIVVRVNNAETEAGDAGVDIYNLTKYTRSNQNTCINQRSIVRQG
DEVARGDVLADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISEKVVQEDRLTTIHIQ
ELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVGPGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSSRVPTGTRGTVIDVQVFTRDGIEKDQRAQSIEKEQLD
QYRKDLKDEYRIVEGATYERLMSALSGQEVIGGPGLKKGAKLDEAYLAELPRPDWFKLRM
KDEGLNELLEKSEQGLEDRKKEHEARFDDKKGKLQQGDDLAPGVLKIVKVYLAIKRRIQP
GDKMAGRHGNKGVISAVMPIEDMPYDEHGTTVDIVLNPLGVPSRMNVGQVLETHLGAAAK
GLGERISQMLDEQRKVAELRKLLDEIYNHSDEVFKVDLDSLSDKEILEMCGNLRSGVPMA
TPVFDGAKEAEVKRMLELAGLSTTGQTVLYDGRTGDAFDRPVTVGYMYILKLNHLIDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK
MYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELESE
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atgacttactcctacactgagaaaaagcggattcgcaaagactttagcaaattgccttcc
gtgatggacgtcccctatttgctgtctattcagctggattcgttccgggacttcctccaa
atggaagccgctcctgaagaccgccgggaaaccggtcttcacgcagcatttaaatccgta
ttcccgattgtcagttactctggcaatgccgcgctcgaatacgtcagctaccgtattggt
gagccggtttttgacgtcaaggaatgtcagcttaggggcgtaacttacgcagcgccgctg
cgggtgaaagtccgccttatcatttacgataaggaatcgtccaacaaggcgatcaaggac
atcaaggaacaagaagtttatatgggcgaaatgcccttgatgaccgagaacggtaccttc
gttatcaatggtaccgagcgtgtaatcgtttcccagctccaccgttcaccgggtgtgttc
ttcgatcacgacaaaggtaaaacgcattcctccggcaagctgttgtattcggcccgggtt
attccttaccgtggttcatggctcgacttcgaattcgacccgaaggactctgtgttcgtt
cgtatcgaccgtcgtcggaagctgccggccaccattctcctgcgtggtctcggatttacc
tccgagcagatgctggaaatgttcttcgataccagtaagttcacgctgggcgcggaaacc
tgcaagctggagctggtgccaagccgtctgcgtggcgatatcgcgaccttcgatatcaaa
gatcagaaaggcaatgtcattgccgaagaaggccgccggattactgcgcgtcacattcgc
cagctggaaaaagccggcatcaatgagcttgacgtgcctaccgagtacctccacggacgc
gtgttggccaaggatatggtcgacagcaagaccggtgaagtgctggccgagtgtaactcc
gagctgacggctgagctgatcgaaaagctgctggacgccggtattaccgagatcgaaacc
ctgtacacgaacgacctcgattgtggtccgttcatgtccgataccctgcgcatcgatccg
acccggacgccgctggaagcgttggtcgaaatctaccgtatgatgcgtccgggggagccg
cctaccaaagagtcggcggaaaacctgtttaccaatctgttcttctcggacgagcgttac
gacctgtccggcgttggccgcatgaagctcaaccgccgtctgggccgtgaggacagtact
ggtccgggcatcctgaccaacgaggacatcattgatgtactcaagaccctgatcaacatc
cgtaacgggcagggccaggtcgacgacatcgataacctcggtaaccgtcgtgtacgttgt
gttggggaaatggctgaaaaccagttccgtgttggcctggttcgtgtcgagcgggcggtg
cgtgagcgcctgagcctggccgaaagcgaaggcttgatgccgcaagacctgatcaacgcc
aagccggttgctgctgcggtcaaagagttctttggctccagccagttgtcccagtttatg
gatcagaacaacccgctgtccgaggtgactcacaagcgtcgtatctctgcgcttggtccc
ggcggcctgacccgtgagcgtgctggtttcgaagttcgagacgtgcacccgacgcattac
ggccgggtatgtccgatcgaaaccccggaaggtccgaacatcggcctgatcaactctctg
gcgacctacgctcgctccaactcctacggcttcctggaaagcccgtaccggaaggttgtt
gaaggtgtggtaactgacgaggtggtttacctctctgccattgaggagagcaactacgtt
atcgcccaggccagcgcggctatggatgaggaatctcgccggctgacggacgagttggtt
accgtgcgtcatcagaacgaatttactgtgatgccgccggaaagcgttaacttcatggac
gtctctccgcgccaggttgtgtcggtggccgcgtctctgattccgttcctcgagcacgac
gacgctaaccgggctctgatgggtgcgaacatgcagcgtcaggcagtgccgaccctgcgt
tcccaggtgcccctggttggtaccggtgtcgagcgtaccgtcgcccaggactccggcgtc
tgtgtgacggctcgccgtggtggtgtgattgaaagcgtcgatgcggctcgcatcgtggta
cgcgtcaacaacgcggaaaccgaggcgggtgatgccggtgtggatatctacaacctcacc
aaatacacccgttcgaaccagaacacctgtattaaccagcgatccatcgtccgtcagggc
gacgaagtggcccgcggtgatgtgctggcagacggtccgtccgtcgatctgggtgagttg
gccctggggcagaacatgcgcatcgcgttcatgccctggaacggttacaacttcgaggac
tcgatccttatttccgagaaagtggtgcaggaagatcgcctgaccacgatccatatccag
gagctgacctgtgtcgctcgggataccaagctcggcagtgaagaaatcaccgcagatatc
ccgaacgtcggtgaaagcgcgctgtcaaaactggatgagtccggcattgtttacatcggt
gcggaagttggccccggtgatattctggtcggtaaggtcacaccgaaaggcgagacacag
ctgactccggaagagaagctgctgcgtgcgatcttcggtgagaaggcgtctgacgtgaaa
gacacctcctcccgtgtaccgaccggcactcgcggtaccgttatcgacgtgcaggtattt
acccgcgacggtatcgagaaggaccagcgtgcccagtccatcgagaaagagcagctggac
cagtaccgcaaggacctgaaagacgagtaccggatcgtcgaaggcgccacctacgagcgt
ctgatgagcgctctgagtggtcaggaagtgatcggtggtccagggctgaagaaaggcgcc
aagctggacgaagcctacctggctgagctgccgcgtccggactggttcaaacttcgcatg
aaggacgagggcctcaacgagttgctggagaaatccgagcaggggcttgaggatcgcaag
aaggagcacgaagcgcgtttcgatgacaagaaaggcaagcttcagcagggcgacgatctt
gctccgggcgtgctgaaaatcgtcaaggtctacctggcgatcaagcgtcgcatccagccg
ggcgacaagatggctggtcgtcacggtaacaagggtgttatctcagcggtcatgccgatc
gaggacatgccttacgacgagcacggcaccacggttgatatcgtgctgaacccgctgggt
gttccttcgcggatgaacgtcgggcaggttctggaaactcatctcggtgcggccgccaag
ggtctgggtgagcgtatcagccagatgctggatgagcagcgtaaagtcgctgaattgcgg
aaattgctggacgagatctacaaccactctgatgaagtgttcaaggtggatctggattct
ctgagcgacaaggaaatcctcgagatgtgcggcaacctgcgttccggcgtaccaatggcg
actccggtcttcgatggagccaaggaagccgaagtgaagcggatgcttgagcttgcgggc
ctgagcaccaccgggcagacggtgttgtacgatggccgtaccggtgatgcattcgatcgt
ccggtgaccgttggctacatgtatatcctgaagctgaaccacctgatcgacgacaagatg
cacgcgcgttccactggttcgtacagcctggttacccagcagccgctgggtggtaaggcg
cagtttggcggacagcgtttcggtgagatggaagtgtgggcccttgaggcttacggcgcg
gcgtatacgctgcaggaaatgcttaccgtcaagtctgatgacgtcaatggtcggactaag
atgtacaagaacattgtcgatggggatcatcgcatggagccgggcatgcccgaatccttc
aacgttcttgtcaaggaaatccgctcgctgggtatcgacatcgagctggaatccgagtaa
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integrated database retrieval system
