Marinobacter salinisoli: LPB19_08040
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Entry
LPB19_08040 CDS
T09746
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
msan
Marinobacter salinisoli
Brite
KEGG Orthology (KO) [BR:
msan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msan03009
]
LPB19_08040 (rlmD)
Enzymes [BR:
msan01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LPB19_08040 (rlmD)
Ribosome biogenesis [BR:
msan03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LPB19_08040 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
PCMT
TRAM
RrnaAD
Methyltransf_11
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltrans_SAM
MTS
Methyltransf_15
Methyltr_RsmB-F
Methyltransf_23
CMAS
Methyltransf_12
Ubie_methyltran
PrmA
RtxA_C
MetW
Motif
Other DBs
NCBI-ProteinID:
QSP96315
LinkDB
All DBs
Position
1762317..1763666
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AA seq
449 aa
AA seq
DB search
MSRRRRKALPSEPVRCSIESLSHDGRGIARQDGKAQFVDGALPGETVMAKMVSTRSKFDE
LRTLEVIEGVSERQTPPCKFADLCGGCSLQHMSGDAQIRFKEDTLREHFAHFGGIEPEEW
IEPMRSDDSLGYRRKARLGVRYVPARESVLVGFREKRNSFLTDIDQCVVMDPRIGERIMP
LRQMLHELDAYKRIAQVEVACGDDAAAMVFRNMDELSEADRARLIEFGQAHELHIYLQPK
GPDTVHRIWPESSGSDDERLSYRLEEFDLTMRFHPMDFTQVNAGINQKMVHRAVEWLDIQ
PGERVLDLFCGLGNFTLPLARRGGQVVGVEGDDTMVVRGRENAQFNGLDNVSFHGADLHG
DFTGQSWAKEGFDKILIDPPRSGAEEICKYLTAFGARRIVYVSCNPATLARDAGVMVRNG
YRLVRAGVMDMFPHTTHVESIALFERDSS
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgagcagacgacgccgcaaggctcttccctcagagcctgtgcgctgtagcatcgagtcc
ctgagtcatgatggccggggcattgcccgtcaggacggcaaggcccagtttgtcgatggg
gccctgccgggcgagaccgtgatggcaaaaatggtgtccacccgcagcaaatttgatgaa
ctgcggactctcgaagtgattgaaggggtgtcggagcgtcagacgccgccctgcaaattt
gccgatctgtgcggtggatgcagtctccagcacatgagtggcgatgcccagatacggttc
aaagaagacaccctgagagagcattttgcccacttcggaggcatagagccggaggagtgg
atcgagcccatgcgctccgatgacagcctcggttatcgccgcaaggcccggttaggggtg
cgctacgtgccggcgcgtgaatcggtgctggttggttttcgcgagaaacgcaacagcttc
ctgaccgatatcgaccagtgcgtggtgatggatccccgcattggcgagcggatcatgccg
cttcggcagatgctgcatgaactggatgcctacaagcgcattgcccaggtggaagtcgcc
tgtggcgacgacgcggctgctatggtcttccggaacatggatgagctgagcgaggcggat
cgcgcgcgtctgatcgagttcggacaggcccacgaattgcatatctatctgcagccgaag
gggccggatacggtgcatcgcatctggccggagtcttccggctctgacgacgaacgcctg
agctatcggctggaagagtttgacctgaccatgcggtttcaccccatggactttactcag
gtcaatgcgggcattaaccagaagatggtgcaccgagcggtggaatggctggatatccag
ccgggcgagagagtgctggatctgttctgtggtctgggcaattttacgctgccgctggcc
cgcaggggcgggcaggtagtgggcgtggaaggtgacgacaccatggtcgtgcgcgggcgc
gagaacgcgcagttcaacgggctggataacgtcagctttcacggcgccgatctgcacggc
gatttcaccggtcagagctgggcgaaagaaggcttcgacaagattctgatcgacccgcca
agatccggtgccgaggaaatttgcaaatatctgacggcgttcggcgcccgcagaatcgtc
tatgtttcctgtaacccggccacgctcgcccgcgacgccggagtgatggtgcgcaatggc
tatcggttggtgcgtgccggtgtgatggatatgttccctcataccacgcatgttgaatcg
atcgctctgtttgagcgcgattcctcctaa
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