Mycobacteroides saopaulense: MYCSP_05035
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Entry
MYCSP_05035 CDS
T05445
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msao
Mycobacteroides saopaulense
Pathway
msao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MYCSP_05035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msao03400
]
MYCSP_05035
Enzymes [BR:
msao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MYCSP_05035
DNA repair and recombination proteins [BR:
msao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MYCSP_05035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
UB2H
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALR10936
UniProt:
A0A1S4VZ06
LinkDB
All DBs
Position
1015763..1019422
Genome browser
AA seq
1219 aa
AA seq
DB search
MTVTAPPLAGVIRTALRDPAFDVLAPAIAAKTGVDLTAPTCARAFVVAGMADAGDAPVLV
VTATTREAQDLAAELRDVYGDAVTLLPSWETLPHERLSPGVDTVGARLQVLHRLAHPEDS
RMGPALRVVVTTVRSLLQPMSPELFDLEPVELTVGAELEFDGLIARLVELAYTRVDMVAG
RGEFAVRGGILDVFSPTADHPVRVEFWGDEVSEMRYFAVADQRSIPELEVTSVLAMPCRE
LLLTDQVRARAAELASAAGVSGSTEGEHRLGAGVGEMLAKLADGMCVDGMESLLPVLHSG
ELTMLVDHLPDNAPVLVCDPEKVRTRAADLERTGREFLEASWSVAAIGADAPIDVAALAD
SGFRELGDVKRTAGEAGHPWWSLSPLSMDDDQAVGLAVRPSPSSRGHKEGAAEIFAMLRA
HVMTGGRAVVVAAGAGTTHRIIEQLAETETPATLLEPGAEPVEGVVGVLRGHLTDGVVLP
GANIVIVTETDLTGSRVAATDGKRLPAKRRNQVDPLALTAGDLVVHDQHGIGRFVEMVER
TVGGARREYLVLEYASSKRGAAAGGQSDRLYVPMDSLDQLSRYVGGESPGLSRLGGSDWT
NTKTKARKAVREIAGELVALYAARQAAPGHAFAPDTPWQREMEDAFGFVETVDQMTAITE
VKSDMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTD
RTAGFPVKVAGLSRFTDSTTSKLVVEGMADGSVDIVIGTHRLLQTGVRWKDLGLVIVDEE
QRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVG
PHDDKQVAAALRRELLRDGQAFYVHNRVSSIDRAAARIRELVPEARVVVAHGQMPEEMLE
RTVQGFWNREYDILVCTTIIETGLDISNANTLIVERADIFGLSQLHQLRGRVGRSRERGY
AYFLYSPEVPLTETAYDRLSTIAQNNDLGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVG
FDLYVRLVGEAVEAYRAAADGKTVQTPEAASSSEVRIDLPVDAHLPTDYIGSDRLRLEAY
RRLAAAADTAQIGAAVEELTDRYGPLPLPVQRLVAVASLRLLCREMGITDLSVVGTNIRI
QPLPLLDSAQLRLKRLHPAAQYRATTSVVQVPIPRSGDGGVGSDRIRDLELVHMIVDLLL
ALSGRPAGSVDITPVEVSK
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgactgtgactgccccgcctctcgccggggtgatccggacagctttgcgggatcccgca
ttcgatgtgcttgccccggccattgccgccaagaccggcgttgatctgaccgcgccgacc
tgcgcccgtgccttcgtcgtggcgggtatggccgatgcgggcgatgcacccgtattggtt
gtgacggccaccacccgcgaggcccaggacctcgccgccgaactgcgtgacgtgtacggc
gacgcggtgaccctgctgccctcctgggagacgctcccgcacgaacggttgtcacccgga
gtagacaccgtcggtgcgcgactgcaggtgctgcaccggttggcgcacccggaggattcc
cggatggggccggcgctgcgtgtggtggtgaccaccgtgcgctcgctgttgcagccgatg
tccccggagctgttcgatctggagccggtggagctcacggtcggggccgagctggaattc
gacgggttgatcgcgcgcctggtcgagctcgcctacacccgggtggacatggtggccgga
cgtggcgagttcgcggtgcgcgggggcattctcgatgtcttcagtcccaccgcagaccat
ccggtgcgtgtcgagttctggggcgacgaggtcagcgagatgcgctactttgccgtcgcc
gatcagcgatcgattcccgagctggaggtcacctccgtactcgcgatgccctgtcgtgaa
ctgctgctgactgaccaggtgcgcgcccgtgcggccgaacttgcctcggcggccggagtt
tccggcagcacggaaggcgagcaccgcctcggcgccggggtgggggagatgctggccaag
ctggccgacggtatgtgcgtcgacggaatggaatcgctactgcccgtgctgcattcgggc
gagctcaccatgctggtcgaccatctgcccgataacgcgcccgtgctggtctgcgacccc
gagaaggtgcggacccgtgccgcggacctggagcgcaccggcagggagtttctcgaggcg
tcgtggtcggtcgcggcgatcggtgccgatgcgcccatcgatgttgccgcgctggccgat
tcgggattccgtgaactcggcgacgtcaagcgcacggccggtgaggccgggcatccgtgg
tggtcactgagcccgttgagcatggacgacgaccaggcggtcggcctggcggtgcggccg
tctccgtcctcgcgtggccacaaggagggcgcggcggagatcttcgcgatgttgcgtgcc
cacgtgatgacgggcggacgtgccgtggtggtggcggccggagccggtaccacccatcgg
atcatcgagcagctggccgaaaccgaaaccccggcaacactgctggagcctggcgcggag
ccggtcgagggtgtggtcggcgtgctgcgcggacacctcaccgacggtgtggtgctgccg
ggggccaacatcgtcatcgtcaccgagaccgacctcaccggcagccgggtcgctgccacc
gacggcaagcggctcccggccaagcgccgcaaccaggttgatccactggccctgaccgcc
ggcgatctcgtcgtgcacgaccagcacggcatcggacggtttgtggagatggtggaacgc
accgtgggcggtgcccgccgcgaatacctggtgctggagtacgcgtcgagcaagcgcggc
gctgccgccggcgggcagagcgatcgtctctatgtgccgatggactccctggatcagctg
tcccggtatgtgggcggcgaatctcccgggctgagccgtctcggcggcagcgactggacc
aacacgaagaccaaggcacgcaaagctgttcgtgagattgccggtgagcttgtcgcgctg
tacgccgcgcgccaggccgcgcccgggcacgccttcgcgccggacaccccatggcagcgg
gagatggaagacgccttcgggttcgtcgagaccgtggaccagatgaccgccatcaccgag
gtgaaatccgatatggagaaaccggttccgatggaccgggtggtgtgcggcgacgtgggc
tacggcaagaccgagatcgcggtgcgtgcggcgttcaaggccgtccaggacggcaagcag
gtcgcggtgctggtgcccaccacgctgctggccgaccaacacctgcagacgttcaccgat
cgcaccgcaggcttcccggtcaaggtggccggtctctcgcgcttcaccgattcgaccacc
tcgaagctggttgtcgagggaatggccgatggctcagtcgatatcgtcatcggcacgcac
cggctgctgcagaccggcgtgcgctggaaggacctcgggctggtgatcgtcgacgaggag
cagcgcttcggcgtcgagcacaaggagcacatcaaggcactgcgcacccacgtggacgtt
ctcaccatgagcgcgacccccattccgcgcaccctggagatgagcctggccggcatccgt
gagatgtcgacgatcttgactccccccgaggagcgctaccccgtgctcacctacgtgggc
ccgcacgacgacaaacaggtggcggcggctctgcggcgcgaattgttgcgcgatggtcag
gccttctacgtgcacaaccgggtgagcagcatcgaccgggcagccgcgcgaatacgcgaa
ctggtccccgaggccagagtcgttgtggcacacggtcaaatgcctgaggagatgctggag
cgcaccgtccagggattctggaaccgggagtacgacatcctggtgtgcaccaccatcatc
gagaccggcctggacatctcgaacgccaacacgctgattgtggagcgggccgacatcttc
gggctgtcgcagctgcatcagctgcgcggtcgtgtcggccgcagtcgcgaacgcggatac
gcctactttctgtactcgcccgaggtgccgctcaccgagaccgcctacgacaggctttcg
accatcgcgcagaacaatgatctgggtgccggtatggcggtggccatgaaggatctcgaa
atccgcggcgcgggcaacgtgctcggcgtcgagcagtccggtcacgtcgccggggtgggc
ttcgatctgtacgtgcgactggtcggggaggccgtcgaggcataccgcgccgccgcagac
gggaagaccgtgcagactccggaggctgcgtcttcttcggaggtgcgcatcgatctgccg
gtcgacgcgcatctgcccacggactacatcggcagcgaccgattgcggctcgaggcatac
cgccgtctcgcggccgctgcggacaccgcacagatcggtgcggccgtggaggagctcacc
gaccgttatgggccgctgccccttccggtgcagcgattggtcgccgtcgcctcgctgcgg
ttgctgtgccgcgagatgggtatcaccgatctttcggtggtcggcaccaacatccgaata
cagccgttgccacttctggactcggcgcagttgcggctgaagcgtttgcacccggccgct
cagtatcgcgcgacgacttccgttgtgcaggttcctatcccgcgctccggcgatggcggt
gtgggctcggaccggattcgcgatttggagctcgtgcacatgatcgtcgatctgctgctt
gcattgtcggggcgccccgcgggcagtgttgatataacaccagtggaggtgagcaaatga
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