Mycobacteroides saopaulense: MYCSP_06170
Help
Entry
MYCSP_06170 CDS
T05445
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msao
Mycobacteroides saopaulense
Pathway
msao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYCSP_06170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msao03019
]
MYCSP_06170
03009 Ribosome biogenesis [BR:
msao03009
]
MYCSP_06170
Enzymes [BR:
msao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MYCSP_06170
Messenger RNA biogenesis [BR:
msao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MYCSP_06170
Ribosome biogenesis [BR:
msao03009
]
Prokaryotic type
rRNA helicases
MYCSP_06170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
UvrA_inter
Surface-like_ins_dom
Motif
Other DBs
NCBI-ProteinID:
ALR11118
UniProt:
A0A1S4VE97
LinkDB
All DBs
Position
1245164..1246987
Genome browser
AA seq
607 aa
AA seq
DB search
MTSTDASPNNTAPDTDESPVQTADTTVTFADLQIAPAVLRAVSDVGYETPSAIQAATIPP
LLAGSDVVGLAQTGTGKTAAFAIPVLSKIDLTSKNTQALVLAPTRELALQVAEAFGRYGA
HMPKLNVLPIYGGQSYVVQLAGLKRGAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEAD
EMLTMGFAEDVERILADTPEYKQVALFSATMPTTIRRLTKKYLHDPVEIAVEAKTKTAEN
ISQRFIQVAGPRKMDALTRILEVEPFEAMIVFVRTKQATEEVAEKLKARGFAAAAINGDI
NQSVRERTVNALKSGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRA
GRSGTAVLFVSPRERHLLKAIEKATGAKLAEEPLPSVEDVNAQRVTKFRDAITAALSAPE
IDVFRGIVADYERENDVPMADIAAALAVQSRDGEQFLLQPDPPREPRQERGERPERGPRE
ARPRTPGLATYRIAVGKRHKVGPGAIVGAIANEGGLHRSDFGHITIRPDHSLVELPAKLS
PKTLKALESTRISGVLIELRPAGRPDGARPERKYPDRKRPHKANTEYKHTDHKRSEAKRP
KRSPKKP
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgacctctacagatgcttcgccgaacaacacagcgccggacacggacgagtcgcccgtg
caaacagccgacaccacggtcaccttcgccgacctgcagatcgccccggcggtgctgcgt
gcggtgtccgatgtcgggtacgagacgccctcggcgatccaggctgccaccatcccaccg
ctgctggcgggctcggatgtggtgggtctcgctcagaccggaaccggaaagaccgcggcg
ttcgccatcccggtgctgtcgaaaatcgatctgacctctaagaacacccaggcgttggtg
ctggctccgacgcgcgagctggccctgcaggtagccgaggcgttcggtcggtacggggca
cacatgcccaaactgaacgtgctgccgatctacggcggccagtcctacgtggtgcagctg
gccggcctcaagcgcggcgcgcaggtggtggtcggcacgccggggcgcgtcatcgaccac
ctggagcgcgggaccctcgacctgtcacacctggattacctggttctggacgaggccgac
gagatgctcaccatggggttcgccgaggatgtcgagcgcatcctggccgacacccccgag
tacaagcaggtcgcgctgttctcggccaccatgcccaccaccatccggcggctcaccaag
aagtatctgcacgatcccgtcgagatcgccgtggaggccaaaaccaagacggccgagaat
atttcgcagcgattcatccaggtcgccggtccacgcaagatggacgcgctgacccggatc
ctggaggtcgagcccttcgaggcgatgatcgtgttcgtcaggaccaagcaggccaccgag
gaggtggccgaaaaactcaaggcgcgagggttcgcggcggccgccatcaacggcgacatc
aatcagtcggtgcgtgagcgcacggtcaacgccctcaagtccggcaccatcgacatcctg
gtggccacggacgtggcggcacgcggtctggatgtggaacgcatctcccatgtgctcaat
tacgacatcccgcacgacaccgagtcctacgtgcaccgcatcggccggacgggtcgcgcg
ggacggtcgggtaccgcggtgttgttcgtttctccgcgtgaacggcatctgctcaaggcc
atcgagaaggccaccggagccaagctcgccgaggagccgctgccgtcggtcgaggacgtc
aacgcccagcgtgtgacgaagttccgtgatgcgatcaccgcggcgctgtcggcgcccgag
atcgacgtgttccgcgggatcgtcgcggactacgaacgcgagaatgacgtgcccatggcc
gatatcgcggccgcgctggcggtgcagtcgcgtgacggcgaacagttcttgttgcagccc
gatccgccgcgtgaaccgcgtcaggagcgcggtgagcgtcctgagcgggggccccgcgag
gcgcgaccccggacccctgggttggcgacgtatcgcatcgccgtcggcaagcggcacaag
gtgggaccgggtgccatcgtgggagcgatcgccaacgagggcggcttgcaccgcagtgat
ttcgggcacatcaccatccgccccgatcactcgcttgtcgagttgcccgccaagctgtcg
cccaagacgctcaaggcgctggagagcacgcgaatttcgggtgtactcatcgagctgcgc
cccgcgggcaggcccgatggtgcgcgccccgagcgcaagtacccggaccgcaagcgtccc
cataaggcaaacaccgagtacaaacatacggaccacaaacgttcggaggcgaagcgtccc
aagcggtccccgaagaagccatga
DBGET
integrated database retrieval system
