Mycobacteroides saopaulense: MYCSP_16260
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Entry
MYCSP_16260 CDS
T05445
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
msao
Mycobacteroides saopaulense
Pathway
msao03420
Nucleotide excision repair
msao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MYCSP_16260
03430 Mismatch repair
MYCSP_16260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msao03400
]
MYCSP_16260
Enzymes [BR:
msao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MYCSP_16260
DNA repair and recombination proteins [BR:
msao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MYCSP_16260
MMR (mismatch excision repair)
Other MMR factors
MYCSP_16260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ALR14288
LinkDB
All DBs
Position
complement(3291578..3294808)
Genome browser
AA seq
1076 aa
AA seq
DB search
MSTYSPAELSRVLGLFEPTDEQAAVIGAPPGPMVVIAGAGAGKTETMAARVVWLVANGYA
TPGQVLGLTFTRKAASQLLRRVRSRLARLAGSGILGPVGADEPDPVIATYHAYAGTLLRE
HGLLLPIEPNARLLTETQLWQMAFRLVCDFDGDLDTEKTPGAVTAQVLALAGQLSEHLVD
TADLLSSHGELEQLIHTLPPGPHQRGGQPSAWLLRLVETQRERTQLVVIVEQLIRLMRAR
GVLDFGAQMSLSARLAADHPVVGQTQRDRYRVVLLDEYQDTGHAQRILLSSLFGRGIDPE
LALTAVGDPIQSIYGWRGASATNLPRFTTDFPLPDGSPAPTRELRTSWRNPPEALHLANA
VSEEARRRSVAVRPLRPRPDAVPGHIACALLGDIAAEREWVAAQLASVYEDARRDGNRPA
SSAVLVRRNSDAAPMAEALAARGVPVEVVGLTGLLGLPEVADTVAMLRLVADPTAGPAAL
RVLTGPRWRLGAHDLAVLWRRATAFGRGGSAAIDEGLGEEADIPCLADAISDPGAPDEYS
PQGWTRLSALRRELSALRGRLGMPLTDLIAEVQRVLALDVELVAGRRTDGLDQLRAFTDV
AAGFADAADQSDPVGVVSAFLQYLDAAWEIEKGLAPVEVATSPGRVQILTVHSAKGLEWD
VVAVPHLSAGVFPSGVAAPTWLTSATELPPLVRGDRATQGDHFGVPQLNTEGITNRKQLS
DAIARHKDSLATRRIDEERRLLYVAVTRSAEKLFVSGHHWGQTGLKPKGPSDFLIELRDV
IEAAATEGIACGTVELWAPAPAAGERNPMLDHTVEAQWPADPLAGRRDDVEAGALMVREA
LAGAAAPPGEHEDDPEGWAADVDALLREREQAHRQPELVLPQHLSVTSLVELRHDPQALV
RRLMRPRPTRPDLEARRGTAFHSWVQRHYGSVRLIDFEDLPGDGYGDYEDAEDLAALQSA
FLDSEWADRTPAEIEVPFEISVAGTVVRGRIDAVFASGDGTWTVVDWKTGHEPSGPDMDA
AALQLSAYRHAWAALQGIDPARVNAVFHYVRTGRTVAPAELPELPQATELGQLTRD
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgagtacttactctccggccgaattatctagggtgttagggcttttcgagcccaccgat
gagcaggctgccgtcatcggtgcgccgccggggccgatggtggtgatcgctggtgccggt
gcgggtaagaccgagaccatggccgcccgggtggtgtggctggtggccaacggatatgcc
acgcccggccaggtgctcggactgaccttcacccgcaaggccgcgagccagttgttgcgc
cgtgtccggtcgcggctggcgcgcctcgccggaagtgggatcttgggccccgttggtgcc
gatgagcccgatcccgtcattgcgacttatcacgcttacgccggaacattgctgcgcgag
cacggcctgctgttgcccatcgaacccaacgcacggctgctgaccgaaacgcagctgtgg
cagatggctttccggctggtctgtgattttgacggtgatctggacaccgagaagacaccc
ggggccgtcaccgctcaggtattggcactggccggccagctgtccgaacacctggtggac
accgccgacctgctgtcctcgcacggtgagttggagcagctgattcacaccctgcctccc
ggtccccatcagcgcgggggccagcccagcgcctggctgttacggctggtcgaaacgcag
agggagcgaacacagctcgtggtgatcgtggagcagttgattcgactgatgcgcgctcgc
ggcgtcctcgatttcggagcgcagatgtcgctgtcggcgcgcctggccgccgaccacccc
gttgtcgggcagacgcagcgcgatcgctatcgggtggtgctgctcgacgagtaccaggac
accggtcacgcccaacgcatcttgttgtcatcgttgttcgggcgaggcatcgatcccgag
ctggccttgaccgcggtcggcgaccccatccaatccatctacggttggcgcggtgcatcg
gcgaccaatctgccccggttcaccaccgactttccgctcccggacggatcaccggcgccg
acaagggaactgcgtaccagctggcgtaacccacccgaggccctgcacctggccaacgcc
gtgtcggaggaggcccgccggcgttcggtggcggtgcggcccctgcgccccaggccggat
gctgtgccggggcacatcgcctgtgcattgctcggtgacatcgctgccgaacgcgaatgg
gtcgcagcgcaattggcttcggtatacgaagacgcgcgccgtgacggaaatcgcccagcg
tcttctgcggtgctggtcaggcgcaacagcgatgcggcccccatggcggaggctcttgcc
gcgcgcggtgttccggtcgaagtggtcggactgacgggcctgctgggcttgccggaggtc
gccgataccgtggcgatgctgcgcctcgtcgcggacccgacggcaggtcccgccgcgttg
cgggtattgaccgggccgcggtggcgcctgggcgcgcatgatctggcggtgctgtggcgg
cgcgcgacggcattcggtcgcggcggctccgcggctatcgacgagggcttgggggaagaa
gccgacattccgtgcctggccgatgccatcagcgatcccggtgcacccgacgagtattcg
ccgcagggctggacacgcctgtctgcactgcgccgggagctgtccgcattgcgtggtcgg
ctcggtatgccgctcaccgatctgatcgccgaggtgcagcgagtgttggcacttgacgtc
gagcttgtcgccggacggcgcacggacggcctggaccagttgcgggccttcaccgatgtg
gccgccggattcgcggacgctgccgaccagagcgacccggtgggggtggtctcggcgttt
ctgcagtacctggatgcggcgtgggagatcgaaaaaggccttgcgcctgtggaagtggcg
acaagtccggggcgggtgcagatcttgaccgtgcactcggccaaggggctggaatgggat
gtggtcgccgtgcctcatctgagcgccggggtgtttccgtcgggtgtggccgcgccgacg
tggctgaccagcgccaccgagctgccgccgctggtgcgtggcgatcgcgcgacccagggc
gatcatttcggggttccgcagctgaacactgagggcatcacgaaccgcaagcagctctcc
gatgccatcgcgcggcacaaggacagcctggccacccgccgcatcgatgaggaacgccgt
ctgctgtatgtggcggtaacccgctcggccgaaaagcttttcgtttcgggccaccattgg
ggccagaccggtctcaaacccaaggggccatccgactttctgatcgagctgcgcgatgtc
atcgaggccgcggctaccgaaggcattgcgtgtgggactgtcgagctgtgggctcccgcg
cccgcggccggtgaacgcaaccccatgctcgaccacaccgtggaagcgcaatggcccgcc
gacccgctcgcgggcagacgcgacgatgtcgaggcgggcgcgctcatggtgcgcgaggcg
cttgccggtgcggcggccccgcccggcgagcacgaggacgatcccgaggggtgggcagcc
gatgtcgatgcgctgctgcgagaacgtgagcaagcccatcgtcaaccggaactggtctta
cctcagcatctttcggtgaccagcctggttgagctgcgacacgacccgcaggcgctcgtg
cgtcgcctgatgcgcccgcgccccactcgcccggacctggaagcgcgtcgcggcacggcc
ttccactcctgggtgcaacgccactacgggtcggtgcggctcatcgatttcgaagatctg
cccggagatggttacggggattacgaggacgccgaggatctggctgccctgcaatcggcg
ttcctggactccgagtgggcggatcgaacccccgcagagatcgaggtgccgttcgagatt
tccgtcgccgggaccgtcgtgcgtggccgaatcgatgccgtgttcgcatccggcgacggc
acctggactgtcgtcgactggaagaccggtcacgagccgtcgggccccgacatggacgcc
gccgcgctacagctgtccgcctaccggcacgcctgggccgcgctgcaggggatcgatcct
gcccgggtaaatgcggtgttccactacgtgcgcacgggccgcacggtcgcccccgccgaa
ctgcccgagctgccgcaggcgaccgagctcgggcagttgacccgcgactga
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