Mycolicibacterium smegmatis MC2 155: LJ00_06815
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Entry
LJ00_06815 CDS
T03433
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
msb
Mycolicibacterium smegmatis MC2 155
Pathway
msb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LJ00_06815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msb03021
]
LJ00_06815
03400 DNA repair and recombination proteins [BR:
msb03400
]
LJ00_06815
Enzymes [BR:
msb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LJ00_06815
Transcription machinery [BR:
msb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LJ00_06815
DNA repair and recombination proteins [BR:
msb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LJ00_06815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AIU06606
UniProt:
P60281
Structure
PDB
PDBj
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All DBs
Position
1461653..1465162
Genome browser
AA seq
1169 aa
AA seq
DB search
MLEGCILAVSSQSKSNAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLVGSDR
WRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKDKDMTY
AAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDE
TIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIV
ERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLA
RVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGGVEVPVEVDD
IDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKE
FFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETP
EGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTD
ENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGA
NMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVIEEVSADYITVMADDGTRQS
YRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGH
NYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGI
VRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIG
IRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPD
GTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEELYSAPAD
STVATPVFDGAQEGELAGLLGSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYPVTVGYMY
ILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELL
TIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRD
GDDEDLERAAANLGINLSRNESASVEDLA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaggatgcatcttggcagtctctagccagagcaagtcgaacgctatcaccaat
aactccgtcccaggggcaccgaaccgagtttcatttgccaagctccgtgaaccgcttgag
gttccggggctgctcgacgttcagacggattccttcgagtggctggtcgggtccgaccgg
tggcggcaggccgccatcgaccgcggcgaggagaaccccgtcggcggcctcgaagaggtc
ctcgccgagctttcccccatcgaggatttctcgggctcgatgtcactgtccttctcggat
ccgcgcttcgacgaggtcaaggcctcggtcgacgagtgcaaagacaaggacatgacgtac
gcggccccgctgttcgtcacggctgagttcatcaacaacaacaccggcgagatcaagagc
cagacggtcttcatgggtgacttcccgatgatgaccgaaaagggcaccttcatcatcaac
ggcaccgagcgcgtcgtggtgtcgcagctggtccgttcgcctggcgtgtacttcgacgag
accatcgacaagtccaccgagaagacgctgcacagcgtcaaggtgatcccgggccgcggt
gcgtggctggagttcgacgtcgacaagcgcgacaccgtcggtgtgcgtatcgaccgcaag
cgccgccagccggtcaccgtgctgctcaaggcgctcggttggaccaacgagcagatcgtg
gagcgcttcggcttctccgagatcatgatgggcacgctggagaaggacaccacctccggc
accgacgaggccctgctcgacatctaccgcaagctgcgcccgggcgagccgccgaccaag
gagtccgcgcagaccctgctggagaacctgttcttcaaggagaagcgctacgacctggcc
cgtgtgggccgttacaaggtcaacaagaagctgggcctgaacgcgggcaagccgatcacc
agctcgacgctgaccgaagaggacgtcgtcgcgaccatcgagtacctggtgcgtctgcac
gagggtcagacttcgatgaccgtcccgggtggcgtcgaggttcccgtcgaggtcgacgac
atcgaccacttcggcaaccgtcgtctgcgcaccgtcggtgagctgatccagaaccagatc
cgcgtgggcctgtcccgcatggagcgtgtcgtgcgtgagcgcatgaccacccaggacgtc
gaggcgatcacgccgcagaccctgatcaacatccgtcccgtcgtggcggcgatcaaggag
ttcttcggcaccagccagctgtcgcagttcatggaccagaacaacccgctgtcgggtctg
acccacaagcgtcgtctttcggcgctgggccccggcggtctgtcccgtgagcgcgccggc
ctcgaggtccgcgacgtgcaccccagccactacggccgcatgtgcccgatcgagacccct
gagggtcccaacatcggtctgatcggttcgctgtcggtgtacgcccgcgtgaacccgttc
ggcttcatcgagacgccgtaccgcaaggtcgagaacggtgtggtcaccgaccagatcgac
tacctgaccgccgacgaggaggaccgccacgtcgtggcgcaggccaactcgccgaccgac
gagaacggccgcttcaccgaggaccgcgtcatggtccgcaagaagggcggcgaggtcgag
ttcgtctccgccgaccaggtggactacatggacgtctcgccgcgccagatggtgtcggtc
gccacggccatgatcccgttcctcgagcacgacgacgccaaccgcgccctgatgggtgcc
aacatgcagcgccaggcggttccgctggtgcgcagcgaggcaccgctggtgggtaccggt
atggaactgcgcgccgcgatcgacgccggtgacgtggtcgtcgccgacaagaccggtgtc
atcgaggaggtctcggccgactacatcacggtcatggccgacgacggcacgcgtcagtcc
taccgcctgcgcaagttcgcccggtccaaccacggcacgtgcgccaaccagcgtccgatc
gtggacgccgggcagcgtgtcgaggccggccaggtcatcgccgacggcccctgcacccag
aacggtgagatggccctgggcaagaacctgctcgtggcgatcatgccgtgggaaggccac
aactacgaggacgcgatcatcctctcgaaccgcctggtcgaagaggacgtgctcacctcg
atccacatcgaggagcacgagatcgatgcccgcgacaccaagctgggcgccgaggagatc
acccgggacatcccgaacgtctccgacgaggtgctcgctgacctcgacgagcgcggcatc
gtccgcatcggcgccgaggtccgcgacggtgacatcctggtcggcaaggtcaccccgaag
ggcgagaccgagctgaccccggaggagcggctgctccgcgcgatcttcggtgagaaggcg
cgcgaggtccgcgacacgtcgctgaaggtcccgcacggtgagtcgggcaaggtcatcggc
atccgcgtgttcagccgcgaggacgacgacgagctgcccgccggtgtcaacgagctggtc
cgcgtctacgtcgcccagaagcgcaagatctccgacggcgacaagctcgccggacgccac
ggcaacaagggcgtcatcggcaagatcctgcccgtcgaggacatgccgttcctgccggac
ggcacgccggtcgacatcatcctgaacacccacggtgtgccgcgtcgtatgaacatcggc
cagatcctggagacccacctcgggtgggtggccaaggccggctggaacatcgacgtcgcc
gcgggcgtgccggactgggcgtccaagctgcccgaggagctgtactcggctcccgcggac
agcacggtggcgaccccggtgttcgacggcgcgcaggaaggcgagctcgccggtctgctc
ggctcgaccctgccgaaccgcgacggtgaggtcatggtcgacgccgacggcaagtcgacg
ctgttcgacggccgcagtggtgaaccgttcccgtacccggtgacggttggctacatgtac
atcctgaagctgcaccacctggtcgacgacaagatccacgcgcgttcgaccggtccgtac
tcgatgatcacccagcagccgctcggtggtaaggcgcagttcggtggtcagcgcttcggc
gagatggaatgttgggccatgcaggcgtacggcgctgcctacacgctgcaggaactgctg
accatcaagtccgacgacacggtgggccgcgtcaaggtgtacgaggcgatcgtcaagggc
gagaacatccctgaacccggtatccccgagtcgttcaaggtgttgctcaaggagctgcag
tcgctgtgcctcaacgtcgaggtgctctccagcgacggcgcggcgatcgagatgcgtgac
ggtgacgacgaggacctggagcgcgctgccgcgaacctgggaatcaacctgtcgcgcaac
gaatccgcgtccgtcgaggatctcgcgtag
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