Mycolicibacterium smegmatis MC2 155: LJ00_24495
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Entry
LJ00_24495 CDS
T03433
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
msb
Mycolicibacterium smegmatis MC2 155
Pathway
msb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LJ00_24495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msb03021
]
LJ00_24495
03019 Messenger RNA biogenesis [BR:
msb03019
]
LJ00_24495
Transcription machinery [BR:
msb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LJ00_24495
Messenger RNA biogenesis [BR:
msb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LJ00_24495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIU09994
LinkDB
All DBs
Position
complement(5049473..5051467)
Genome browser
AA seq
664 aa
AA seq
DB search
MTETDLFTADNASDTGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGLRK
SELIAAIRAHRGESNGRTAEASSPATADAQTGEQAAEAPAPRRRERRASTRQAGAPVAEK
GEAGEKAGEKTEAQPEAKTEAQPEAKAEAPAEAKTERAEKADKPAKEAQTKAAEAPEAGE
SQESQPRQRRERSGRQDRADRGEKDGQDGKQDQGKQDRSERDQDQQGGGQQNRGGGSGNN
ADSDDDGEGRQGRRGRRFRDRRRRGERGGEGGNDTELREDDVVQPVAGILDVLDNYAFVR
TSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRVPREGDSGGQNQRQKFNPLVRLDTVN
GGSVEDAKKRPEFGKLTPLYPNERLRLETSPERLSTRVIDLIMPIGKGQRALIVSPPKAG
KTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTQAA
ELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGA
ARNIEHGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPS
GTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLISQLRKTKTNYEFLVQVSKTAPGS
MDVD
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaaacggacctcttcacagctgacaatgccagcgacactggcgatttgtcgggt
gctgtgaaatcgaacaccgcgccgcgcgcccggtccgcgtcgctttcgacgatggtgttg
ccggagctgcgcgcgcttgccaaggaaatcggtgttgaaggtgcgtccggtctgcgcaag
agtgagctgatcgccgccattcgcgcccaccgaggcgaatccaacggccggaccgctgag
gccagcagcccggcgaccgccgacgcccagaccggcgagcaggccgccgaggcgcccgcc
ccgcgtcgtcgcgagcgtcgtgcgtccacccgccaggccggcgctcctgtcgccgagaag
ggtgaggccggcgaaaaggccggcgaaaagaccgaggcgcagcccgaggccaagaccgag
gcgcagcccgaagccaaggccgaagctcctgccgaagccaagaccgaacgtgccgaaaag
gccgacaagcccgccaaggaagcccagaccaaggctgccgaggcacccgaggccggcgag
tcccaggagtcccagccccgtcagcgccgtgagcgttccggcaggcaggaccgcgccgac
cgtggcgagaaggacggccaggacggcaagcaggaccagggcaagcaggaccgttccgag
cgtgaccaggaccagcagggtggcggccagcagaaccgcggtggcggttcgggcaacaac
gccgattccgacgacgacggcgagggccgccagggccgtcgcggccgccggttccgtgac
cgccgcaggcgcggtgagcgcggcggcgagggtggcaacgacaccgagctgcgcgaggac
gacgtcgtgcagcccgtcgcgggcatcctcgacgtcctggacaactacgcgttcgtgcgg
acctcgggctacctggccgggccgaacgacgtgtacgtctcgatgaacatggtgcgcaag
aacggcctgcgccgcggcgacgccgtgaccggtgccgtgcgcgtgccgcgtgaaggcgac
agcggcggccagaaccagcgccagaagttcaacccgctggtgcgtctggacaccgtcaac
ggcggctcggtcgaggacgccaagaagcgccccgagttcggcaagctcacgccgctgtac
ccgaacgagcggctgcggctggagaccagccccgagcgtctctcgacgcgtgtgatcgac
ctgatcatgccgatcggcaagggtcagcgcgccctgatcgtgtcgccgcccaaggccggt
aagaccacgatcctgcaggacatcgccaacgcgatcacccgcaacaaccccgaatgccac
ctgatggtcgtgctcgtcgacgagcggcccgaagaggtgaccgacatgcagcggtcggtg
aagggcgaggtcatcgcctcgacgttcgaccgcccgccgtcagatcacacgcaggccgcc
gagctggccatcgagcgcgccaagcgcctcgtggagcagggcaaggacgtcgtggtgctg
ctggactcgatcacccgcctgggccgtgcgtacaacaacgcctcgcccgcgtcgggccgc
atcctgtctggtggtgtcgactccaccgcgctgtacccgcccaagcgcttcctcggcgcc
gcccgcaacatcgagcacggcggctcgttgaccatcatcgcgaccgccatggtcgagacc
gggtcgaccggtgacaccgtcatcttcgaggagttcaagggcaccggtaacgccgagctc
aagctggaccgcaagatcgccgagcgccgggtgttcccggccgtcgacgtcaacccgtcc
ggcacccgcaaggacgagctgctgctgtccccggacgagttcgcgatcgtgcacaagctg
cgtcgcgtgttgagcgggctggattcccaccaggccatcgacctgctgatcagccagctg
cgcaagaccaagaccaactacgagttcctggtccaggtgtccaagacggcccccggctcg
atggacgtcgactga
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