Methylocystis sp. SC2: BN69_0607
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Entry
BN69_0607 CDS
T02324
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
msc
Methylocystis sp. SC2
Pathway
msc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN69_0607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msc03019
]
BN69_0607
Enzymes [BR:
msc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN69_0607
Messenger RNA biogenesis [BR:
msc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN69_0607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CheB_methylest
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
CCJ06058
LinkDB
All DBs
Position
complement(653280..654608)
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AA seq
442 aa
AA seq
DB search
MTFSDLGLNEILLRALEREGYTTPTPVQAQSIPALLQGRDLLGVAQTGTGKTAAFALPIL
HRLLADKRRPAPNTARALILAPTRELAAQIADSFRSYGHFFRPSVGVIVGGVSHRPQNEM
LARGLDVLVATPGRLLDHLGSGRLRLATTEVLVLDEADHMLDLGFIVPIRQIVAKLPKQR
QTLLFSATMPREISALADDMLRDPAKVSVTPAATTAERVAQHVYLVSGGAKRDLLVELLN
DREISRAIVFTRTKRGADRVAQHLESAGVGADAIHGNKSQSQRLRALDGFRKGRTRVLVA
TDIAARGIDVDGVTHVVNFELPEVAEAYVHRIGRTARAGATGQAISLCDNGERPLLRAIE
KLTRQTLEFTDRRAEGARQDDGDSARPAPKRANSPAPHRNGAQHPRRDGQRPAAKRPGAS
FNGQKRPANGGARHKQANRPQG
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacattctccgatctcggcttgaacgagatcctgctccgcgcgcttgagcgcgaaggc
tacaccacgccgacgccggttcaggcgcagtccattcctgcgctcctgcaaggtcgcgac
cttctcggcgtcgcccagaccggcaccggcaagacggcggctttcgctctgccgatcctg
caccggctgctcgccgataaaaggcgcccggcgcccaacacggcgcgcgcgctgattctc
gcgccgacgcgggaactcgcggcgcagatcgccgatagtttccgctcgtacggccatttc
tttcgtccaagcgtcggcgtcatcgtcggcggcgtgtcgcatcgtccgcagaatgaaatg
ctggcgcgcggcctcgacgttctggtggcgacgcccgggcgtctgctcgaccatctcggc
agcggccgtttaaggctcgcgacgaccgaagtgctcgttctcgacgaagccgaccatatg
ctcgatcttggatttatcgttccgatccgccagatcgtcgcgaaactgccgaagcaacgc
cagacgctgctgttctcggcgacgatgccgcgcgagatctccgcgctcgccgacgatatg
ctgcgcgatccggcgaaagtctcggtgacgccggcggcgaccaccgccgagcgcgtcgcg
caacatgtctatctggtgtcgggcggcgccaagcgcgacctgctggtggaactgctgaac
gaccgcgagatttcgcgcgcgatcgtgtttacgcgcaccaagcgcggcgccgatcgcgtc
gcgcagcatctggagagcgccggcgtcggcgccgacgcgatccacggcaacaagagccag
agccagcggctgcgcgccctcgacggcttccgcaagggccgcacgcgggtgcttgtcgct
accgatatcgccgcgcgcggcatcgacgtcgacggcgtgacgcatgtcgtcaatttcgaa
ttgccggaagtcgccgaagcctatgtgcatcgcatcggccgcacggcgcgggccggcgcg
accggccaggcgatttcgctctgcgacaatggcgaacggccgttgctgcgcgccattgaa
aagctgacgcgtcagacgcttgaattcactgaccggcgcgccgaaggcgcccgccaggat
gacggcgactccgcgcgcccggcgcccaagagggcgaattcgccggcgccgcatcgaaac
ggcgcgcagcacccacggcgcgatggacagcgtcccgccgcgaagcgaccgggcgcctcg
ttcaatggtcagaagcgccccgcaaatggcggcgcgcgtcacaagcaggcgaaccgtccg
cagggataa
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