Methylocystis hydrogenophila: BN69_0782
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Entry
BN69_0782 CDS
T02324
Name
(GenBank) Ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msc
Methylocystis hydrogenophila
Pathway
msc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN69_0782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msc03019
]
BN69_0782
03009 Ribosome biogenesis [BR:
msc03009
]
BN69_0782
Enzymes [BR:
msc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BN69_0782
Messenger RNA biogenesis [BR:
msc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN69_0782
Ribosome biogenesis [BR:
msc03009
]
Prokaryotic type
rRNA processing factors
BN69_0782
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CCJ06233
LinkDB
All DBs
Position
complement(847050..850034)
Genome browser
AA seq
994 aa
AA seq
DB search
MANKMLIDASHPEETRVVVLRGNRVQEFDFEAADKKPLRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPVADRQALLDEESRAHQQADEEERVPHGRGRRSRRRQHE
GAEKRVSADEAVTGELLDDSAASPVVIEDQAETGFAESAEERSEAAPAFAPQAGAQEPLD
AWPAAVETQARGQDVGAEQLDAGKPESVEAGPERSDIEAEAGDETLAAGQHERISIDPAG
FGLVETGEAEEFALESTEPDHELKARRQDERDEARERAREDSEDETAEVSARVDAPVEEH
DEEEHDDEDDHVEHIGGDAMDEAPYRAPRARRQYKIQEVIKRRQVLLVQVVKEERGNKGA
ALTTYLSLAGRYSVLMPNTARGGGISRKITDGADRKRLKEIVHDLEVPEGMGVILRTAGA
TRTKQEVKRDFEYLLRLWESVRELTLRSAAPTLVYEEGSLIKRAIRDLYGRDVEEVVVSG
EDAYREAKDFMRMLMPSHAKNVRLHRDAFPIFAESGVEAQLDAMFSNHVTLKSGGYLVIN
QTEALVAIDVNSGRSTREHNIEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMEESR
NNRAVERRLKDALKNDRARIQVGRISHFGLLEMSRQRIRAGVVEGSTVPCPHCAGAGHVR
STASVALHVLRVLEEALVKSAAHDVTLRTRAVVALYILNQKRAHLQELERRFGVHITVAA
DDTLTGATYHALERGELATGPRVSQRDAPLRVDSVLAEPLEEEAPEDVIAGEMVEAEEEA
VESNGDQRDENGERSRFGADEEASRGRRRRRRRGRGGGAQGGELLAPGVDQPSDEGLAFM
AAIEGAPAPAEERPDRRGGRRGGNRSPERGPGRWRRSAPLPEEFKDPSAVFALDEGREEA
PALISPRVAQAPEFPAPLPVPPPVNGAEIAPLSQERASEPVARIAPSQAPTPTPAPAPEP
VAPREPTEVVITQADPDRPKKGGWWQRVRTPFGS
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaagatgctcatcgacgcctcccacccggaggagacccgcgtagtcgttcta
cgtggaaaccgcgttcaggaattcgatttcgaggctgccgacaaaaaaccgctacgcggc
aacatttatctcgcgaaggtcacgcgggtcgagccgtcccttcaggccgctttcgtcgac
tatggcggaaaccgtcacggctttctggcctttgcggaaattcaccctgactactatcag
atccccgtcgccgatcgacaggcgctgctcgacgaagagagccgcgcccatcagcaggcc
gacgaggaagagcgcgttccgcacggtcgcgggcgccggtcgcgccgccgccaacatgag
ggcgccgagaagcgcgtgagcgccgacgaggctgtgacgggcgaactcctcgatgattcg
gccgcttcgccggtcgtcatcgaggatcaggccgaaacaggcttcgccgaatcggccgag
gagcggtctgaagccgcgccggcgttcgcgcctcaggcgggggcgcaggaaccgcttgac
gcttggccagcggccgtcgagacccaagcgcggggccaagacgtcggggcggagcagctt
gacgcgggaaagcccgaatccgtcgaggccgggccagagcgctcggacatcgaggccgag
gcgggcgatgagacgctcgctgcggggcagcatgagcggatttcgatcgatcccgccggt
ttcggcttggtcgagaccggcgaggccgaggagttcgcccttgagtcgaccgagcccgac
cacgaactgaaagcgcgccgacaggacgagcgtgacgaggcgcgtgaacgcgcccgcgaa
gattcggaagacgaaacggctgaggtcagcgcccgcgtcgacgccccggttgaggagcac
gacgaggaagagcatgacgacgaggacgatcacgtcgagcacatcggcggggacgcgatg
gatgaagcgccttatcgcgcgccgcgcgcccgccgccagtacaagattcaagaggtcatc
aagcgccgtcaggtgctgctcgttcaggtcgtcaaggaagagcgcggcaacaagggcgcg
gcgctcacgacctatctttcgctcgctggccgctattcggtgctcatgcccaacaccgcg
cggggcgggggcatttcgcgcaagatcaccgacggcgccgaccgcaaacgcctgaaagag
atcgtgcatgatctcgaagtgccggagggcatgggcgtcatcctgcgaaccgcgggggcg
acgcgcaccaagcaggaggtcaagcgcgatttcgaatatctgctgcggctgtgggagagc
gtgcgcgaattgaccctgcgctccgcggccccgaccctcgtctatgaggaaggctcgctc
atcaagcgggcgattcgcgacctttacgggcgcgacgtcgaggaagtcgtcgtttcgggc
gaagacgcctatcgcgaggccaaagacttcatgcgcatgctgatgccgagccacgcgaag
aacgtgcgcctgcatcgcgacgcgtttccgatcttcgccgaaagcggcgtcgaggctcag
ctcgatgcgatgttctccaaccatgtcacgctgaaatcaggcggctatctggtcatcaac
cagaccgaggcgctggtcgccatcgacgtgaactcgggacgttcgacgcgcgagcacaat
atcgaggacacggcgcttcgcaccaatctcgaagccgccgacgaagtcgcgcggcagttg
cgactgcgcgatctcgccgggctgatcgtcgtcgatttcatcgacatggaggagagtcgc
aacaatcgcgccgtggagcggcgcttgaaggacgcgctgaaaaacgaccgcgcccgcatt
caggttggccgcatctcgcatttcggcttgctcgaaatgtcgcgccagcgcatccgcgcc
ggcgtcgtcgagggctcgacggtgccatgtccgcactgcgccggcgccggccatgtgcgc
tccaccgcctccgtcgcgctgcatgtgttgcgcgtgctggaggaggcgctggtcaagagc
gccgcgcatgacgtgacgctgcgaacccgtgcggtggtggcgctctacattctcaaccag
aagcgcgcccatctgcaggagctcgaacgccgcttcggcgtccatatcacggtcgccgcc
gatgacacgctcaccggcgcgacctatcacgcgctcgagcgcggcgaactcgcgaccggg
ccgcgggtttcgcagcgcgacgcgccgttgcgcgtcgattcggtgctcgccgaacctctg
gaggaagaggcgccggaagacgtgatcgcgggcgaaatggtcgaggcggaagaggaagcc
gtcgagtcgaacggcgatcagcgtgacgagaacggcgaacgatcgcgttttggcgcggat
gaagaggcgtcgcgcgggcgtcgccgtcgccgtcgccgaggccgtggcggcggcgcacag
ggcggcgaactcttggcgcccggcgtcgaccagccgtccgacgaaggcctcgccttcatg
gcggcgatcgagggcgcgccggcgcccgccgaggaacggcctgaccgccgcggcggccga
cgcggcggcaaccgaagtccagagcgcggtcctggccggtggcggcgatccgcccccttg
ccggaggaattcaaagacccgtcggcggtcttcgcgctcgacgagggtcgggaggaggcg
ccggccctgatctccccgcgtgtggcccaggcgccggagtttccggcgcccttgccggtt
ccgccgccggtaaacggcgccgagattgcgccgctctcccaagagcgcgcaagcgagccg
gtcgcccggatcgctccttctcaggcgccgacgccgacgcccgcgcccgcccccgagccg
gtcgccccgcgcgagcccacggaagtggtcatcacgcaggcggaccccgaccgcccgaag
aagggcggctggtggcagcgcgtgcgcacgcctttcggaagttag
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