Methylocystis sp. SC2: BN69_2106
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Entry
BN69_2106 CDS
T02324
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
msc
Methylocystis sp. SC2
Pathway
msc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN69_2106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msc03019
]
BN69_2106
03400 DNA repair and recombination proteins [BR:
msc03400
]
BN69_2106
Enzymes [BR:
msc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN69_2106
Messenger RNA biogenesis [BR:
msc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN69_2106
DNA repair and recombination proteins [BR:
msc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BN69_2106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
CCJ07557
UniProt:
J7Q922
LinkDB
All DBs
Position
2169375..2170949
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AA seq
524 aa
AA seq
DB search
MTGLSAQELLRSKFGFADFLPGQAEIVEAVLTGRDVIAIMPTGSGKSLLYQLPAAAPGRG
LVLVCSPLIALMRDQLRTLAGSGVGAVALHSMQEDDEAAAAIDAVASGRAKLLYAAPERL
AQDGMQNLLRSMRIKLFAVDEAHCVSHWGHEFRPDYRALGDIARKLGAPPMLAVTATAGP
RTRDDIARTLFSRPPQIFQRSFARPNLALDFTQKRAGLRQIVDFARKGRGAKESGIIYCN
SRNKTDALARELSRLGFDAPPYHAGLDAHTRSVSQDAFFTRKGAVMVATIAFGMGVDKPD
VRFIIHADLPTSVEGYYQEIGRAGRDGAPARALTLFSPAELALRWRIPEAAQDTDAAAGD
YARRQAMARLAAAPGCRFQRLLAEFGEASGPCGRCDHCRGGPLAWPRRLSSFALGWRAAL
ASGFAAPADLSESEADLPELAPAPIDAPRRQEEPSLTVAEARLLRALEAERFAIAKRRRL
PPRIVASEQALRALARERPQSADDPLLRGLEDPAALLRVIREAL
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgacggggctgtccgcgcaagaattgctgcgcagcaaattcggttttgcggacttcctg
ccgggtcaggcggagatcgtcgaggccgtgctcactgggcgcgacgtcatcgccatcatg
ccgacgggctccggcaaatcgctcctctatcagctgccggccgccgcccccgggcgcgga
ctcgttctcgtctgttcgccgctcatcgcgctgatgcgcgaccaactgcgaacgctcgcc
ggttcgggggtcggggccgtcgcgctccattccatgcaggaggacgatgaggcggcggcc
gcgatcgacgccgtcgcgtcgggccgggcgaagctgctttacgccgcccccgagcgtctc
gcccaggacggaatgcagaatttattgcgcagcatgcgcataaaactctttgcggtcgat
gaggcgcattgcgtctcgcattggggccatgagtttcgccccgactatcgcgcgctcggc
gacattgcgcgaaagctcggcgcgccgccgatgctcgccgtcaccgcgacggccggtccg
cgcacccgcgacgacatcgcccgcaccctgttttcacggccgccgcagatcttccagcgc
tccttcgcgcggcccaatcttgcgctcgattttacgcagaagcgcgccggcctgcggcag
atcgtcgatttcgcgcgcaaaggccgcggcgccaaggaaagtggcattatttattgcaat
tcgcgcaacaagaccgatgcgctggcgcgcgaactctcgcggctggggttcgatgcgccg
ccctatcacgcggggctcgacgcccacacgcgctcggtgagccaggacgccttctttacc
cgcaagggcgcggtgatggtggcgaccatcgccttcggcatgggcgtcgacaagcctgac
gtgcgcttcatcattcacgccgatctgccgacgtcggtcgagggctattatcaggagatc
ggccgggccggacgcgacggcgccccggcccgggcgctgacgctgttctcgccggcggag
ctggcgctgcgctggcgcattccggaagcggcgcaagacactgacgcggccgccggcgat
tacgccaggcgccaggcgatggcgcggctggcggcggcgccgggctgccgattccagcgc
ctcctcgccgaatttggcgaagcgagcggcccctgcggcagatgcgatcattgccgcggc
gggccgctggcgtggccccgccgcctctcatccttcgcgctcggctggcgcgcggcgctt
gccagcggcttcgccgcgcccgccgatctgtcagaaagcgaggccgatctgcctgaactc
gcgcctgcgccgatcgacgcgccgaggcggcaggaggagccgtcgctgacggtggccgag
gcgcggctgctgcgcgcgctcgaggccgagcggttcgccatcgccaaacggcgccgcttg
ccgccgcgcatcgtggcgtccgaacaggcgctgcgcgccctcgcccgcgaaaggccgcaa
agcgccgacgatccgctgctgcgcggtctcgaagacccggcggcgctgctgcgggtgatc
cgcgaagccctttaa
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