KEGG   Methylocystis sp. SC2: BN69_2165
Entry
BN69_2165         CDS       T02324                                 
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
msc  Methylocystis sp. SC2
Pathway
msc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BN69_2165 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msc03021]
    BN69_2165 (rho)
   03019 Messenger RNA biogenesis [BR:msc03019]
    BN69_2165 (rho)
Transcription machinery [BR:msc03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BN69_2165 (rho)
Messenger RNA biogenesis [BR:msc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BN69_2165 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 S1CSD-TOTE-2 AAA_25 NACHT ATPase_2 AAA Fungal_virus_P2_C Spore_III_AA AAA_14
Other DBs
NCBI-ProteinID: CCJ07616
LinkDB
Position
2231611..2232876
AA seq 421 aa
MREIKLSDLKAKSAAELLAFAEEHEVENASLLRKQELLFAILKQFASRDVEIVGVGVVEV
LQDGFGFLRSPDANYLAGPDDIYVSPSQIRKFGLRTGDTVEGMIRSPKEGERYFALLKVN
SINFEDPEKVRHKVPFDNLTPLYPDERLKLEIEDPTRKDLSSRIIDLVAPIGKGQRALVV
APPRTGKTVLLQNIAQSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKVSDKRIFPA
LDITRSGTRKEELLVAPDILKKMYVLRRILNPMGTVDAIEFLLGKLRETKNNQGFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaattaaactttcggacttgaaggccaagtccgccgccgaactcctcgctttc
gccgaagagcacgaagtcgagaacgcatcgctcctgcgtaagcaggagctcctcttcgcg
attttgaaacaattcgccagtcgcgacgtcgaaatcgtcggcgtcggcgtcgtcgaagtg
ctgcaggacggctttggcttcctgcggtcgcccgacgcgaattatctcgccggtcccgac
gacatttacgtctcgccctcgcagatccgaaagttcggcctgcgcaccggcgacacggtc
gagggcatgatccgcagcccgaaagagggcgaacgctatttcgcgctgttgaaagtcaac
agcatcaatttcgaagatcccgagaaggtgcgccacaaggtgcccttcgacaatctgacg
ccgctctatcccgacgagcgcctcaagctcgagatcgaagacccgacccgcaaggatctc
tcgtcgcgcatcatcgatctcgtcgcgccgatcggcaaagggcagcgcgcgctggtcgtg
gcgccgccgcgcaccggcaagaccgtgctcctgcagaatatcgcgcagtcgatcacgacc
aatcatcccgagtgctatctcatcgtgctgctcatcgacgagcggcctgaggaagtcacc
gacatgcagcgttcggtgaagggcgaggtcgtctcctcgaccttcgacgagccggcggtg
cgccacgtgcaggtcgcggaaatggtgatcgagaaggcgaagcgtctcgtcgaacacggc
cgcgacgtggtgatcctgctcgattcgatcacgcggctcgggcgcgcctacaacaccgtc
gtgccgtcgtccggcaaggtgctgaccggcggcgtcgacgccaatgcgctgcagcggccg
aagcgcttcttcggcgcggcgcgcaatatcgaggaaggcggctcgctgacgatcatcgcg
acggccttgatcgacaccggctcgcgcatggacgaagtcatcttcgaagagttcaagggc
accggcaacagcgagatcattctcgaccgcaaggtttccgacaagcggattttcccggcg
ctggacatcacccgttccggcacccgcaaggaagaactgctcgtcgcgcccgacatcctc
aagaagatgtatgtgctgcgccgtatcctcaatccgatgggcacggtcgacgcgatcgaa
tttttgctcggcaagctgcgcgagacgaaaaacaatcagggcttcttcgattcgatgaat
acgtaa

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