Methylocystis sp. SC2: BN69_3456
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Entry
BN69_3456 CDS
T02324
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
msc
Methylocystis sp. SC2
Brite
KEGG Orthology (KO) [BR:
msc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msc03019
]
BN69_3456
Enzymes [BR:
msc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BN69_3456
Messenger RNA biogenesis [BR:
msc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BN69_3456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CCJ08907
UniProt:
J7QAL9
LinkDB
All DBs
Position
3562079..3564667
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AA seq
862 aa
AA seq
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MLHDLSSLPIDDALPAIRATLEASSNLVVVAPPGAGKTTRIPLALLGAEWAKGGKLILLE
PRRLAARAAASRMAATLGESVGETIGLRMRLESKVSARTRVEVVTEGVFARMILDDPALE
GVSGVLFDEYHERSLDADLCLALALDAQAGLRDDLRLIAMSATLDGARVAALMDAKTIES
QGRAFDVETRYLGRDADARIEDAMTRAILRALREERGSILAFLPGQGEIMRVASRLAESR
LPDDIDVAPLYGALDRGEQDLAIAPARPGRRKIVLATSIAETSLTIDGVRVVVDSGLARV
QRFEPDLELSRLETVRAARASVDQRRGRAGRTEPGVCYRLWDEPQTAALPAFAAPEILDA
DLSGLALDLAAWGVSDPGDLKWLDPPPAPAWKEAVALDRELGALDDDGRLTDMGRAMRAL
PLAPRLARMALEAAGHGEAKRAAELAMLLSERGIGGADADLSHRLERLHGENAKRARDAL
RLAAQWARQAMAAAGVLPPPQPSPANAGEGVDSALHRERAKGRSLSSPLPRSGGGTGRGQ
LSDGALIALAYPDRIAKSRGARGEFLMANGRAAILPIEDPLSRAPFLAVAELTGRAAQAR
ILAACALTSDEVEAIAADRIETRDETIFDAASASLRRRAFRRLGAIRLSERNLAVEASDE
NARMLARGVASLGVARLPWTKAQMQRRDRVDFLRRAEGDEWPDLSDAALAASADDWLAPF
IHGRASLADISADDLEAALAELLPYELSRRLDAEAPAYFETPAGARHALDYSTENGPILA
VRVQELYGLSIHPTLARGRAPLTLELLSPAHRPIQTTRDLPSFWKGSWSEVKKEMRGRYP
RHLWPDDPAAAQPTTRAKPRGG
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgctgcatgacctttcgtcgctgccgatcgacgacgcgctgccggcgatccgcgccacg
cttgaggcgtcgtccaacctcgtcgtcgtcgcgccgcccggcgccggcaagacgactcgc
attccgctcgcgctgctcggcgccgaatgggccaagggcggcaagctcatcctgctggag
ccgcggcgtctcgcggcccgcgcggcggccagccgcatggccgcgacgctcggcgagagc
gtcggcgaaacgatcggcctgcggatgcgcctcgaatcgaaagtctcggcgcgaacccgc
gtcgaggtcgtcaccgaaggcgtgttcgcgcggatgattctcgacgatccggcgctcgag
ggcgtctccggcgtgctgttcgatgaatatcacgaacgctcgctcgacgccgatctctgt
cttgcgctggcgctcgacgcccaggcgggactgcgcgacgatctgcggctcatcgccatg
tcggcgacgctcgacggcgcccgcgtcgccgccctgatggacgccaagacaatcgagagc
cagggtcgcgccttcgacgtcgagacgcgctatcttggccgcgacgcggatgcgcgcatc
gaagacgcgatgacgcgcgcgatcctgcgggcgttgcgcgaagagcggggctcgattctc
gcgtttctgccagggcagggcgaaatcatgcgcgtcgcgtcgcgtctcgccgagtcgcgc
ctgccggacgacatcgacgtcgcgccgctctatggcgcgctcgatcgcggcgagcaggac
ctcgccatcgcgccggcgcggcccggccgtcgcaagatcgtgctcgccacgtcgatcgcg
gagacctccctcaccatcgacggcgtgcgcgtcgtcgtcgacagtgggctggcgcgcgtg
cagcgcttcgagcccgatctcgaattgtcgcggctcgagaccgtgcgcgctgcgcgcgcc
agcgtcgatcagcgccgcggccgcgccggccgcaccgagcccggcgtctgctatcgcctg
tgggacgaaccgcagacggcggcgctcccggccttcgccgcgcccgaaattctcgacgcc
gatctttcaggactggcgctcgatctcgccgcctggggcgtgagcgatcccggcgatctc
aaatggctcgatccgccgccggcgcccgcctggaaggaggcggtcgcgctcgatcgcgaa
ctcggggcgctcgatgacgatgggcggctgaccgacatgggacgcgccatgcgggcgctg
ccgcttgcgccgcgtttggcgcgaatggcgctcgaggcggcgggccatggcgaggcgaag
cgcgccgccgaactcgccatgctgctttcggagcgcgggatcggcggcgccgacgccgac
ctttcgcatcggctcgagcgcctgcacggcgaaaacgccaaacgcgcgcgcgacgccctg
cgcctcgctgcacaatgggcgcggcaggcgatggcggcggcaggcgttttgccccctcct
caaccctcccccgctaacgcgggagagggagtggactcggcgcttcatcgagagagagcg
aaaggccgatcattatcgtcccctctcccgcgaagcggaggagggacagggagggggcag
ttatcagacggcgcgctgattgcgctcgcctatcctgaccgcatcgcgaaatcgcgcggc
gcgcgcggcgaattcctgatggcgaacggccgcgcagcgatattgccgatcgaagatccg
ctgtcgcgcgcgccattcctcgccgtcgccgagctcaccggccgggcggcgcaggcgcgc
atcctcgcggcctgcgcgctcacttccgacgaggtcgaggcgatcgcagccgaccgcatc
gagacgcgcgatgaaaccatttttgatgcggcgagcgcgagcctgcggcgccgcgcgttt
cggcggcttggcgcgatacgtctttccgaacgcaatctggcggtcgaggcgtccgacgaa
aacgcaaggatgctcgcgcgcggcgtcgcgtcgctcggcgtcgcgcgcctgccatggacg
aaggcgcaaatgcagcggcgcgaccgcgtcgactttttgcgccgcgcagagggcgacgaa
tggccggacctctccgacgccgctctggcggcaagcgccgacgactggcttgcgcctttc
atccatgggcgcgcgtcgctcgccgacatttcggctgacgacctcgaggcggcgctcgcc
gagcttcttccctatgagttgtcgcgcaggctagacgccgaagcgccggcctatttcgaa
acgcccgccggcgcgcgtcacgcgctcgactattcgaccgagaatgggccgatcctcgcg
gtgcgcgtgcaggagctttacggcctttcgattcacccgacgcttgcgcgcggccgcgcg
cccttgacgcttgaactgctctcgccggcgcatcggccgatccagacgacgcgcgatctg
ccgagcttttggaagggctcctggagcgaggtcaagaaggagatgcgcggacgctacccg
cgccatctctggccggacgatccggcggccgcgcagccgacgacccgcgccaagccgcgg
ggcgggtga
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