Mucispirillum schaedleri: N508_000913
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Entry
N508_000913 CDS
T08201
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msch
Mucispirillum schaedleri
Pathway
msch03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msch00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N508_000913 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msch03021
]
N508_000913 (rpoC)
03400 DNA repair and recombination proteins [BR:
msch03400
]
N508_000913 (rpoC)
Enzymes [BR:
msch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N508_000913 (rpoC)
Transcription machinery [BR:
msch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N508_000913 (rpoC)
DNA repair and recombination proteins [BR:
msch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N508_000913 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
USF23846
UniProt:
V2QIG2
LinkDB
All DBs
Position
complement(964240..968295)
Genome browser
AA seq
1351 aa
AA seq
DB search
MKKSIRENKSSVFFDAIRIKIASPEKILSWSSGEVTKPETINYRTFKPERDGLFCAKIFG
PVKDWECLCGKYKRMKHRGIVCEKCGVEVIQSKVRRVRMGHIDLASPVCHIWFFKGTPSR
IGSILDLSIKDIERVVYFESYIVTDPKSSGLKERQILTEEQYRKSVEDFGANGFVAKIGA
EAVKDLLKKVDLDLLLIELKSELRETNSMQKRLKLAKRLRVVEAFRKSNNRPEWMVLDVI
PVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKKLMELNAPEIIIRNEKRMLQEA
VDALFDNGRRGRIIRSSNKRPLKSLSDMIKGKNGRFRQNLLGKRVDYSGRSVIVAGPHLK
MHQCGLPKLMALELFKPFLYYKLEKERGIASTVKQAKRMVEERRQEVWDVLEEVIREHPV
LLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSFQAQLEAR
TLMLSAYNILSPANGQPLAIPTQDMVLGIYYLTRPLKNAFGSGKIYSSPEEVIIAIDHGK
LSLQAEIKVRIDGKMYDTSAGRVILYGIVPEGIDFEQVNKVLGKKELGKLVDYIYKKLGN
WYSVTFLDNLKDLGFKYSTIAGYSICIDDMIIPKEKNELIVEAYGKVQEIERHYREEAAL
SKGERYNQIIDVWSKTNEKITDKLIKTIENLGGDASKENKREKYYNTLYVMSDSGARGSK
AQIAQLAGMRGLMAKPSGEIIETPIDSNFREGLTMSQYFISTHGARKGLADTALKTANSG
YLTRRLVDVAQDLIISEDDCGTIKGIEVGPLFQGASVVESLGERIYGRYTLEDLFDTLTD
ELVVEADTFIDEEVIEKIEKAGIDKVMVRSALTCDSEFGICKKCYGLDLATRRMIEMGEA
AGTIAAQSIGEPGTQLTMRTFHIGGIASAGGIESSMSSRMGGSVAFEGMKTLRNRKNEIV
VLNRNGSIMIKDASGRILEKYTPGYGSVIRVEEGDTVTKGQLLFDWDPHVSVIMTEFAGT
VAYGDLTEGETLKEEVDQTTNISQKVVVANSKEKRRPRISIKDADNKTVYRYELTPGTII
SYNEGDEVYPGDIIAKIPREAQKTKDITVGLPRVAELFEARKPKDPAIIAEIDGIVKIEN
AVRGMKKLTIENENTGDKKVYSINTMRYINAHEGDYIRAGEALIDGNINPHDILAVLGEE
ALAKYLVDEIQIVYRKSGVSINDKHIEVIVRQMLKKVIIEDAGDSDFMPNEEVYKSEFKK
VQQELLSEGKEPPKGRPILQGITKAALNTESFISAASFQETTRVLTDAACSGKTDKLRGL
KENVIMGKLIPAGTGSKHIINGKFKFITQEN
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaagtattagagagaataagagttcagtgttttttgatgctatacgcataaaa
attgcatctcctgagaaaatattaagctggtcatcaggggaagtaactaaacctgaaaca
attaactacagaactttcaaacctgaaagagatggtcttttttgtgccaaaatatttggt
cctgtaaaagactgggaatgtttatgtggtaaatataaacgaatgaaacacagaggtatt
gtctgtgaaaaatgtggtgttgaagttatccagtcaaaagtccgccgtgttcgtatgggt
catattgatttagcatcacctgtatgccatatatggttttttaaaggaactccatcacgc
ataggctctattcttgacttatcaattaaagatattgaaagggtagtatattttgagtca
tacattgttactgacccaaaatcatctggcttaaaagaaaggcagattttaacagaagag
cagtatagaaaatctgttgaagattttggtgcaaatggctttgtagctaaaatcggagca
gaagctgtaaaagacttactgaaaaaagtagaccttgatttacttttaattgaacttaaa
agcgaattaagagaaactaacagtatgcagaaacgcttaaaacttgctaaaagattaaga
gtagtggaagcattcaggaaatcaaacaaccgcccagaatggatggtgcttgatgttatt
cctgttataccgccagaattacgcccacttgttccacttgatggcggcagatttgctaca
agtgacttaaacgacttatacagacgggttattaacagaaacaaccgtcttaaaaaactt
atggagttaaatgctcctgaaattattatccgcaacgaaaaaaggatgcttcaagaggca
gtagatgctctttttgataacggcagaagaggcagaataatccgttcaagcaataaacgc
ccattaaaatcattatcagatatgattaaaggtaaaaatggtcgtttccgtcaaaacctt
ttgggtaaaagggttgactattctggccgttcagttattgttgcaggtccgcatttgaaa
atgcaccagtgtggtctgccaaaattaatggcattagaattatttaaaccatttttatat
tataaacttgaaaaagaaagaggcatagcatcaactgtaaaacaagcaaaaagaatggta
gaagaacgcagacaggaagtatgggatgtattagaggaagtaatcagagaacaccctgta
ttattaaaccgtgcccctacactgcacaggcttggtattcaggcttttgaaccacagtta
attgaaggtaaagcaatacagcttcacccacttgtatgcactgcatttaatgctgacttt
gacggtgaccaaatggcagtccatgtgccgttatcatttcaggcacagcttgaagcaaga
acacttatgctttctgcttacaatattttatcgcctgctaacgggcagccgcttgctatt
cctacacaggatatggttttaggtatttactatttaactcgtccattaaaaaatgcattt
ggcagtggtaaaatatattcttctccagaagaagtaattattgctattgaccatggcaaa
ttaagcctgcaggcagaaattaaagtaagaattgatggtaaaatgtatgatacatcagca
ggtcgtgtaattctttacggtattgttcctgaaggcattgattttgaacaggtaaataaa
gttttaggtaaaaaagagttaggaaaacttgttgactatatttataaaaaattaggcaac
tggtatagtgttacattccttgataacttaaaagatttaggatttaaatactctactatt
gcaggatattcaatctgtatagatgatatgattatccctaaagagaaaaatgaacttatt
gtagaggcttatggtaaagttcaggaaattgaaagacattacagagaagaagcggcactt
tctaagggtgagcgttataaccagataattgatgtatggtcaaaaactaacgagaaaatt
actgataaacttataaaaacaattgaaaacttaggcggcgatgcttcaaaagaaaataaa
agagaaaaatattacaatactctttatgttatgagtgactctggtgcaagggggtctaaa
gctcagattgctcagcttgctggtatgcgtggtctgatggctaaaccatcaggtgagatt
attgaaacacctattgactctaacttccgtgaaggtttaacaatgagccagtattttatt
tcaactcacggtgcccgtaaaggtcttgcagatactgcattaaaaacagcaaactctggt
tatcttacccgccgtcttgttgatgttgctcaagatttaattatttcagaagatgactgc
ggaacaattaaaggtattgaagttggtccgttattccaaggtgcttcagttgttgaatca
cttggtgaaaggatatacggcagatacacattagaagatttatttgacacattgactgat
gagttagtagtagaagcagatacttttattgatgaagaagttattgagaaaatagaaaaa
gctggtattgataaagtaatggttcgctcagcacttacatgtgacagtgaatttggtata
tgtaaaaaatgttatggtttagatttagcaacacgccgtatgatagaaatgggtgaagcc
gcaggaactattgcagctcagtctattggtgagcctggaacacagcttacaatgagaaca
ttccatattggtggtattgcgtctgctggtggtatagaatcatctatgagctcaagaatg
ggtggttctgttgcatttgaaggtatgaaaactcttcgcaacaggaaaaacgaaatagtt
gttcttaacagaaacggctctattatgattaaagacgcaagcggtcgtatattagaaaaa
tatactcctggatatggcagtgttatccgtgtagaagaaggcgatactgtaacaaaaggt
cagctcttgtttgactgggacccccatgtatctgttattatgacagagtttgcaggaaca
gttgcctatggagatttaacagaaggcgaaactttaaaagaagaagtagaccagacaaca
aatatttctcaaaaagtagttgttgctaactctaaggaaaaacgcagaccgcgtatatct
attaaagatgcggataataaaactgtttatcgttatgaattaacacctggaacaattatt
tcatataatgaaggcgatgaagtatatcctggtgatattattgcgaaaatcccacgagaa
gcacaaaaaactaaagatattactgttggtcttcctcgtgttgctgagctttttgaagca
aggaaaccaaaagaccctgcaattattgcagaaattgatggtatagttaaaatagaaaat
gctgtccgcggtatgaaaaaacttactattgaaaacgaaaatactggggataaaaaagta
tacagcataaacactatgcgttatatcaatgctcacgaaggcgactatattcgtgcaggt
gaagcattaattgacggtaacattaatccgcatgatatattagctgtattaggtgaagaa
gcacttgctaaatacttagtagatgaaatacagatagtatatagaaaatcaggtgttagc
attaatgataaacatatagaagtaattgttcgtcaaatgcttaaaaaagtcattattgaa
gatgctggagattctgactttatgccaaacgaagaagtatataaaagcgaatttaaaaaa
gttcagcaggagcttttatctgaaggaaaagaaccgccaaaaggcagacctatacttcaa
ggtattacaaaagctgcacttaatacagaaagctttatttctgcagcatcttttcaggag
acaacaagagtgcttacagatgcggcatgttctggtaaaacagacaaacttcgcggctta
aaagaaaatgttattatgggtaaattaatacctgctggaacaggctctaaacacattatc
aatggtaaatttaaatttatcactcaggaaaattaa
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