Mucispirillum schaedleri: N508_001316
Help
Entry
N508_001316 CDS
T08201
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msch
Mucispirillum schaedleri
Pathway
msch03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N508_001316 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msch03400
]
N508_001316 (mfd)
Enzymes [BR:
msch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N508_001316 (mfd)
DNA repair and recombination proteins [BR:
msch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N508_001316 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
MFD_D3
RecG_dom3_C
Cas3-like_C_2
UB2H
PfaD_N
Motif
Other DBs
NCBI-ProteinID:
USF24233
UniProt:
V2QC70
LinkDB
All DBs
Position
complement(1384149..1387466)
Genome browser
AA seq
1105 aa
AA seq
DB search
MSNYFEYHNAWGASASFYACCKKKKGVPLVIFLPENKSVMESVKNELELFSDLKILDYPS
YTQNPFEEARPLTSIMAARSRTLYNIINEKDYILLLSPYSMLKKIPFKNEFLESIITLEK
NKEYPMQKLERELDKLGYIHVEFVTDAGEYTFRGGIADIFAAGYIDPVRIEYFDDEIESI
FIYNKDSQTRKKEITGIKILPVSDLLITTEEFKAQLKDGELKEKAESFGKFAGFHWLVPY
INKEQSDIFEYLDKYDTVCFMSNIQNSIYGYYDIIESSVQNAIQKESFITAKEAVEKLRR
NDIYIISEITDSVESVPLTFASSKTRFSFEKKNLYQSMTNAAETLLALLKENMKIVFSVE
SEKFAGIFKDFLRDYDIFPKEIKKLSEIEKASISLYRKHISGGFIDKDSGYAVISDMDIF
GFTKRKPKPKKKDAFNTKLSDLEEGDYVVHVNHGIGIYQGIKHIAIAGSEGDFLSIMYEG
DDLLYVPLHSIGQLQKYIGMQNQQPKLNSLKSSAWQKLKKHAKESAKHIAEDLLRLYAER
KARKGYAFIDDGSLIEIFERNFEYTETEDQLSAIYDVYNDMESETPMERLVCGDVGFGKT
EVAMRAACKAIACSKQVAVLVPTTILARQHYETFIERFKGLPVNIEFVSRFRTDRHTKEI
FNKISDGAVDILIGTHKILSKDLSFKDLGLLIIDEEQRFGVSHKEKIASIKRNVDTLTLS
ATPIPRTLQLSLSGIRDMSIIETPPENRLPVVVKVIKGLSERIKAIKTELERGGQVFFLH
NRVQDIEEAAIEIKRELPLARVDYAHGQMDAKTMEKILSSFYSGEIDVLVATTIIENGIN
IPNVNTIIINNAARFGLSQLYQLKGRVGRSSRRGYCYLAVDDFARLNSIAQKRLSIIQQL
SDLGSGFKIAMYDLQLRGAGNILGAEQSGFVVRVGYELYVAMIEEAVQEMKGEYTNIADT
EINSNIAYFIPADYIENPRIRFDFYRRFADIYDINSMGELLKEIEAGYGELPEEVLNLSL
IMLIKNFASMLGAEKLMLSKSGASKVTFAKETKLNPALIVKCSQDRKILYRFISEYELSL
VADTQEPLKLTADFFQDLYTLSRAD
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgtctaactattttgaatatcataatgcatggggagcatcagcatctttttacgcatgt
tgtaaaaagaagaaaggtgttcccttagttatttttctgcctgaaaataagtctgtaatg
gaaagtgttaaaaatgaattagagctgttctctgatttaaaaatattagactatccatct
tatacacaaaacccttttgaagaagcaagaccacttacttccataatggcagcaagaagc
agaactctttataatataattaatgaaaaagattatattctgcttttatctccatattct
atgcttaaaaaaataccttttaaaaatgaatttttagaaagcataattacattagaaaaa
aataaggaatatcccatgcagaagcttgaaagggagcttgataaacttgggtatatccat
gttgaatttgtaacagatgcgggtgaatatacattccgcggcggtatagcagatattttt
gcggcaggatatattgaccctgtccgcatagagtattttgatgatgagatagaaagtatt
tttatatataataaagacagtcagacaaggaaaaaagaaataacaggtataaaaatactg
ccagtatcagatttacttattacaacagaagaattcaaagcacaactaaaagatggagag
ttaaaagaaaaggcggaaagttttggcaaatttgcaggcttccactggcttgtgccatat
attaataaagagcagtcagatatttttgaatatttagacaaatatgacactgtatgtttt
atgagtaatatacagaacagcatatatggatattatgacataatagagtcatctgtgcag
aatgctatccagaaagaaagttttattacagcaaaagaagcagtagaaaaattaagaaga
aatgatatttatataatatcagagataacagacagtgttgaaagtgtgccgttaactttt
gcaagttcaaagacacgcttctcatttgagaaaaaaaacttataccagtccatgacaaat
gctgctgaaactttgcttgcacttttaaaagaaaatatgaaaatagtattttctgtagaa
agtgaaaagtttgcaggcatatttaaagattttcttagagattatgatattttcccaaaa
gaaataaaaaaactttcagaaatagaaaaagcatctatttctttatatagaaagcatatt
tctggcggctttattgataaagatagtggttatgcagttatttctgatatggatatattt
ggctttacaaaaagaaagccaaagcctaagaagaaagacgcatttaacactaaactttca
gatttggaagaaggcgactatgttgttcatgtaaaccatggtataggcatatatcagggt
ataaaacatatagctattgcaggcagtgaaggtgattttttatcaattatgtatgaaggg
gatgacctgctttatgttccacttcattcaataggtcagctgcagaaatatataggtatg
cagaaccagcagccaaaactaaacagtttaaaaagttctgcatggcagaagctgaaaaag
catgcaaaggaaagtgcaaaacatattgcagaagatttgctccgtttgtatgcagaaaga
aaggcaaggaaaggttatgcttttattgatgacggctctttaatagaaatatttgagaga
aattttgaatatacagaaacagaagaccagctttctgctatatatgatgtttataatgat
atggaaagcgaaacaccaatggaaaggcttgtatgcggtgatgttgggtttggaaaaaca
gaagttgcaatgcgtgcagcatgtaaagctattgcatgcagcaaacaggttgccgtgctt
gtgcctactactatacttgcaaggcagcattacgaaacatttatagaaagatttaaaggg
ctgcctgtaaatattgagtttgtatcgcggtttagaacagacaggcatacaaaagagatt
tttaataaaatttcagacggtgcagttgatatattaataggcactcacaagattttatca
aaagatttatcatttaaagatttggggcttttaataatagatgaagagcagcggtttgga
gtaagccataaggaaaaaattgcatcaattaaaagaaatgtagatacattaacattaagt
gctacaccaataccaagaacactgcagctttcattatcaggcataagagatatgagtatt
atagaaacaccacctgaaaacaggctgcctgttgtagttaaagttattaaaggactatct
gaaaggataaaagccataaaaacagagcttgaaagaggcggacaggttttttttctgcat
aacagagtgcaggatatagaggaagctgctattgagataaaacgagagctgccacttgca
agagttgactatgcccacgggcagatggatgcaaagacaatggaaaaaatcctttcatct
ttttacagtggggaaatagatgtgcttgttgcaacaacgattattgaaaatggcattaat
attcccaatgtaaatactattataataaataatgcagcccgttttggactttctcagctt
tatcagttaaagggtagagttggcagaagcagcaggcgtggttattgttatttagcagtg
gatgattttgcaagattaaacagtatagcacaaaaaagactttctattattcagcagtta
tctgatttaggcagcggatttaaaatagctatgtatgatttacaattaagaggtgctggc
aatattttaggtgcggagcagtcaggttttgtggttagagtgggctatgagctgtatgtt
gcaatgatagaagaggcagtgcaggaaatgaaaggggagtatacaaatattgcagataca
gagataaactctaatattgcatattttataccagcagattatatagaaaatccacgaata
agatttgatttttatagacggtttgcagatatttatgatattaatagtatgggtgagctt
ttaaaggaaatagaggcaggttatggggagcttcctgaagaagttttaaatctttcctta
attatgcttattaaaaattttgcaagtatgcttggtgcagaaaaacttatgctttcaaaa
tctggagcgtcaaaagtaacttttgcaaaagaaacaaaattaaatcctgcattaattgta
aaatgcagtcaggacaggaagatattatatagatttatttcagagtatgagctttcactg
gtggcagatacacaagaaccattgaaattaacagcagatttttttcaggatttatataca
ctttcaagggcagattag
DBGET
integrated database retrieval system
