Myxococcus stipitatus: MYSTI_00055
Help
Entry
MYSTI_00055 CDS
T02436
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
msd
Myxococcus stipitatus
Brite
KEGG Orthology (KO) [BR:
msd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msd03016
]
MYSTI_00055
Enzymes [BR:
msd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MYSTI_00055
Transfer RNA biogenesis [BR:
msd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MYSTI_00055
Prokaryotic type
tRNA splicing ligases
MYSTI_00055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6301
Motif
Other DBs
NCBI-ProteinID:
AGC41414
UniProt:
L7U4J0
LinkDB
All DBs
Position
complement(68331..69683)
Genome browser
AA seq
450 aa
AA seq
DB search
MSWKQRLEKVAEGHYVLPKTKSMRVDANLFLSDKLLWGEGPDLPALEDAVFDQVVNAASF
PGVTRVAVTPDCHVGYGVPIGTVVETDGILLPTAAGYDIGCGMVQLQTTLTAEDVADVAK
RRQWIEQVTRRIAVGVGASRVQHQRKVSDKAFADVVRHGAKALGRGSAITERDFIPVEDD
RVDIPDRAYEKRGQLGSLGGGNHFTEMQVDEEGRVWVMLHTGSRGFGWNIAKHFFVEGAA
QLGLKSRSEDFVWLDADSPLGREYWNLHNMAANFAVANRLIIGEAVCAALEDVFGGTASV
YYEISHNLIQKEAGKFVARKGATRAFPAGHPSLKKTTWEGTGHPILIPGSMETGSAILFA
EEGASKSIYSVNHGSGRRLSRGEARRVLKQDVTDARMAESGILLNTRHTPLDESGPCYKN
LEDVLETVEMAGLAKVARRLKPVACIKGAD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagctggaaacaacgattggagaaggtcgccgagggccactacgtcctgccgaagacc
aagagcatgcgggtggacgcgaacctgttcctgtccgacaagctgctctggggtgagggg
cccgacctcccggcgctcgaggacgccgtcttcgaccaggtggtcaacgccgcgtccttc
ccgggcgtcacccgagtcgccgtcaccccggactgccatgtgggctatggcgtccccatc
ggcaccgtggtggagaccgacggcatcctcctgcccaccgccgcgggctacgacatcggc
tgcggcatggtgcaattgcagacgaccctcaccgccgaggacgtggcggacgtcgccaag
cgccgccagtggattgagcaggtgactcgccgcatcgcggtgggcgtgggcgccagccgc
gtgcagcaccagcgcaaggtgtccgacaaggccttcgccgacgtggtgcggcatggcgcc
aaggccctgggccgaggctccgccatcaccgagcgcgacttcatccccgtggaggatgac
cgggtggacatccccgaccgcgcctacgagaagcgcggccagttgggcagcctgggcggc
ggcaaccacttcaccgagatgcaggtggacgaggagggccgcgtctgggtgatgctccac
accggcagccgcggcttcgggtggaacatcgccaagcacttcttcgtggagggcgccgcg
cagctgggcctcaagagtcgcagcgaggacttcgtctggctggacgccgacagcccgctg
ggccgtgagtactggaacctccacaacatggccgccaacttcgccgtggccaaccggctc
atcatcggcgaggccgtgtgcgccgcgctggaggacgtgttcggcggcaccgcgagcgtc
tattacgagatctcccacaacctcatccagaaggaggccgggaagttcgtcgcccgcaag
ggcgccacgcgcgcgttccccgcgggacacccctcgctcaagaagacgacgtgggagggc
accgggcaccccatcctgattcccggctccatggagacgggcagcgccatcctcttcgcg
gaggaaggggcgtccaagtccatctactcggtgaaccacggctccggccgccgcctgtct
cggggcgaggcgcgccgcgtgctcaagcaggacgtcaccgacgcgcgcatggcggagtcc
ggcatcctcctcaacacccgccacaccccgctcgacgagtccggcccctgctacaagaac
ctggaggacgtgctggagacggtggagatggcggggctggccaaggtggcgcgccgcctc
aagcccgtcgcctgtatcaagggcgcggattga
DBGET
integrated database retrieval system
