Myxococcus stipitatus: MYSTI_02865
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Entry
MYSTI_02865 CDS
T02436
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
msd
Myxococcus stipitatus
Pathway
msd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYSTI_02865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msd03021
]
MYSTI_02865
03019 Messenger RNA biogenesis [BR:
msd03019
]
MYSTI_02865
Transcription machinery [BR:
msd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MYSTI_02865
Messenger RNA biogenesis [BR:
msd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MYSTI_02865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
AAA_25
Rho_RNA_bind
AAA_22
NACHT
TFIIA
ResIII
AAA
Spore_III_AA
AAA_16
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AGC44181
UniProt:
L7U5N8
LinkDB
All DBs
Position
complement(3634594..3636165)
Genome browser
AA seq
523 aa
AA seq
DB search
MSENSDNRDPRDAPPMPAAARPVPPPEADDDGGDDGDDEGGDEGDIAGGAAASGGAPGGQ
PGQAGGRRRRRRRRRRGAQVLFTPEGQAYRMQPGADGQQVQVFLTPQELEQYKQRLAQQQ
AQQQQPQQQQQQQQGHGGGQPHQRQHHGGQQNPQAQQSNLAPVEGVLDTEAKGPNAFLRQ
VKRNLLAAPDDPELPKNLVQKLRLRQGQYLTAFAQMRGHKGIIQKVDTVDGRPLEGAPRL
PHFADLTSVDPTERLKLECGHKEMVTRVLDLISPIGKGQRALIVAPPKTGKTIMLQRIAQ
AVISNHPEAHVMVLLIDERPEEVTDMRRSIKAEVLASSSDRPTADHLKVAELALERARRL
VEAGKDVVILLDSITRLARAYNKEIDNSGRTMSGGVDSRALERPKRIFGAARATEEAGSL
TIIGTALIDTGSRMDEVIFEEFKGTGNSEVTLDRLLAEKRVFPAVNIAQSGTRKEEKLFT
LREYEKVKKLRQMLFSVKPVEAMEALVKRLSRYTYNDEFLDEL
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaactccgataaccgcgacccacgtgatgcccctccgatgcccgcggcggcc
cgtcccgtccctcctccggaggccgatgacgacggcggcgacgatggcgacgacgagggc
ggcgacgagggagacatcgcgggcggtgccgcagcgtccggtggcgccccgggagggcag
cccgggcaggcaggtggccgccgccgccgccgccgtcgtcgtcgtcgtggcgcgcaggtg
ctcttcacgccggagggccaggcgtaccgcatgcagcccggcgccgacggtcagcaggtc
caggtcttcctgacgccgcaggagttggagcagtacaagcagcggctggcgcagcagcag
gcccagcaacagcagccccagcagcagcagcaacagcagcagggccacggcggcggacag
ccgcatcagcgccagcaccacggcggccagcagaacccgcaggcgcagcagtccaacctg
gcgcccgtggagggcgtgctggacacggaggccaagggccccaacgcgttcctgcgccag
gtgaagcgcaacctgctggcggcgccggacgacccggagctgcccaagaacctggtgcag
aagctgcggctgcggcagggccagtacctgacggccttcgcgcagatgcgcggccacaag
ggcatcatccagaaggtcgacacggtggacggccgcccgctggagggcgcgccccggctg
ccccacttcgcggacctgacgtcggtggaccccaccgagcggctcaagctggagtgtggc
cacaaggagatggtgacgcgggtgctggacctcatctcgcccatcggcaaggggcagcgc
gcgctcatcgtcgcgccgcccaagacgggcaagaccatcatgctccagcgcatcgcgcag
gcggtcatctccaaccacccggaggcgcacgtcatggtgctgctcatcgacgagcggccc
gaggaagtgacggacatgcgccgcagcatcaaggcggaggtgctcgcgtccagctcggac
cggcccaccgcggaccacctcaaggtggcggagctggccctggagcgtgcccgccgactg
gtggaggccggcaaggacgtggtcatcctgctggactcgatcacgcgtctggcgcgcgcc
tacaacaaggagatcgacaactcgggccgcaccatgtccggcggcgtggacagccgcgcg
ctggagcgccccaagcgcatcttcggcgccgcgcgcgccacggaagaggcgggctcgctg
accatcatcggcacggcgctcatcgacaccggcagccgcatggacgaggtcatcttcgag
gagttcaagggcacgggtaactccgaagtcaccttggaccgcctcctcgcggagaagcgc
gtgttccccgcggtgaacatcgcccagtccggcacgcgcaaggaggagaagctcttcacc
ctgcgcgagtacgagaaggtgaagaagctgcggcagatgctcttctcggtgaagccggtg
gaggccatggaagcgctcgtcaagcggctctcccggtacacctacaacgacgagttcctc
gacgagttgtag
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