Myxococcus stipitatus: MYSTI_03540
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Entry
MYSTI_03540 CDS
T02436
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msd
Myxococcus stipitatus
Pathway
msd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MYSTI_03540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msd03021
]
MYSTI_03540
03400 DNA repair and recombination proteins [BR:
msd03400
]
MYSTI_03540
Enzymes [BR:
msd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MYSTI_03540
Transcription machinery [BR:
msd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MYSTI_03540
DNA repair and recombination proteins [BR:
msd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MYSTI_03540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AGC44846
UniProt:
L7U7G5
LinkDB
All DBs
Position
4446424..4450635
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDIFNFFEKPKDPLSFNAIRIALASPDKIRQWSHGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERLGHITLATPVAHIWFLKSL
PSRIGNLLDITLKELEKVLYCESYIVLDPKSTPLQKGELISEEKMHRLYQEHGEDSFTTG
MGGEAVREMLKALDVERLSEDLRKDMRETTSEAKRKKYAKRLKVAEAFRVSGNKPEWMML
DVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRML
QEAVDALFDNGRRGKTITGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELRLHQCGLPKIMALELFKPFIYNKLEEKGYVTTIKSAKKMVEKERPEVWDILEDVIREH
PVLLNRAPTLHRLGMQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQME
ARVLMMSTNNILSPANGKPIIVPTQDMVLGIYYMTRAREFANGEGRVFSSPDEVRAAHDH
GEVHLQAKVVCRIDGKRKETTVGRVLLWEVVPRRVGFDAINKVLDKKSLGGLIDLCYRLT
GEKETVLLADRIRSLGYFNATRAGISIALKDMIIPAKKQEFLDYARKEVAEIENQYLEGL
ITDGERYNKVIDIWAEVTEKVAQEMMQQISQEEASGDKDGKRESRKQPSFNPIYIMADSG
ARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLSVLQYFISTHGARKGLADTALK
TANSGYLTRRLVDVAQDAIINEYDCGTMDGLFIGALVEGGEIIEPLGERILGRVALDDIL
DPVTGEVLVRANEEIDEDRVRRIENSGLDKVKIRSVLTCQAKRGICVECYGRDLARGRKV
SVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATRRAEQSSLENRYAGRVKFAGLITVQKM
DGTLVAMNRNGELVVVDDSGRERERYQVIYGARILVKEGQRIEPGTLVAEWDPFAIPLLT
EVGGVVRYEDIIEGVTMSETLDEVTGLSRKTIIESKDPEARPRVSIRDAQGNTKDLPSSR
NPASYFLPQGSIITVNDGDEIHPGEVIAKVPRETTKTKDITGGLPRVAELFEARKPKDAA
AIAEIDGVVSFGKDTKGKRKLIITPEVNGEQRTDLAKEYLISKGKNISVHSGDRVKAGEA
MMDGAANPHDILKVLGEKELARYLVDEVQEVYRLQGVKINDKHIETIVRQMLRRVRVTDV
GDTNFLVDEQVEKWVFEEENEKIMAEGKRPAVGEPLLLGITKASLSTESFISASSFQETT
KVLTEAAINGKVDYLRGLKENVIMGRLIPAGTGLPNYKHLDIEVESPTDEVNEMEAALAG
AHGDSGPLSGASRSEGTQSTGAA
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggacattttcaacttcttcgagaagccgaaggacccgttgtcgttcaacgccatc
cgcatcgcgctggcgtcgcccgacaagattcggcagtggtcgcacggcgaggtgaagaag
ccggagaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcccgc
attttcgggcctgtgaaggactacgagtgcaactgcggcaagtacaagcgcatgaagcac
cgtggcgtggtgtgtgagaagtgcggcgtggaggtcatccagtcgaaggtccgccgtgag
cgcctgggtcacatcaccctggcgacgccggtggcccacatctggttcctgaagtcgctg
ccgagccgtatcggcaacctgctcgacatcacgctcaaggagctggagaaggtcctctac
tgcgagagctacatcgtcctcgaccccaagtcgacgccgctgcagaagggcgagctcatc
agcgaggagaagatgcaccggctctaccaggagcacggtgaggactccttcaccacgggc
atgggcggcgaggccgtccgtgagatgctcaaggcgctggacgtggagcgtctgtccgag
gacctgcgcaaggacatgcgcgagaccaccagcgaggcgaagcggaagaagtacgccaag
cgcctgaaggtggcggaggcgttccgcgtctctggcaacaagcccgagtggatgatgctg
gacgtgattccggtgattccgccggacctgcgcccgctggttccgctcgacggcggccgc
ttcgcgacgtccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctg
aagcgcctgcaggagctcaacgctccggacatcatcatccgcaacgagaagcggatgctg
caggaggccgtggacgcgctgttcgacaacggccgccgcgggaagaccatcaccggcccg
aacaagcggccgctcaagtcgctgtccgacatgctcaagggcaagcagggccggttccgc
cagaacctgctcggcaagcgcgtggactactcgggccgctccgtcatcgtcgtcggtccc
gagctgcgcctgcaccagtgcggcctgccgaagatcatggcgctcgagctgttcaagccg
ttcatctacaacaagctcgaggagaaggggtacgtcaccaccatcaagtcggcgaagaag
atggtggagaaggagcgtcccgaggtctgggacatcctcgaggacgtcatccgcgagcac
ccggtgctcctcaaccgcgcgcccacgctgcaccgtctgggcatgcaggccttcgagccc
gtgctgattgaaggcaaggccatccagctccacccgctggtgtgcgccgccttcaacgcc
gacttcgacggcgaccagatggccgtgcatgtgccgctctccatcgaagcccagatggaa
gcccgcgtgctgatgatgtcgacgaacaacatcctcagccccgcgaacggcaagcccatc
atcgtcccgacgcaggacatggtgctcggcatctactacatgacgcgcgcccgcgagttc
gccaacggcgagggtcgcgtgttcagctcgcccgacgaagtgcgcgccgcgcacgaccac
ggcgaggtgcacctgcaggcgaaggtggtctgccgcatcgacggcaagcgcaaggagacc
accgtcggccgcgtcctcctgtgggaagtggttccgcgccgcgtgggcttcgacgccatc
aacaaggtgctggacaagaagtcgctcggtggcctcatcgacctctgctaccgcctcacg
ggcgagaaggagacggtgctgctcgcggaccgcatccgcagcctgggctacttcaacgcg
acccgcgccggtatctccatcgcgctcaaggacatgatcatccctgcgaagaagcaggag
ttcctggactacgcgcgcaaggaagtggcggagatcgagaaccagtacctcgagggtctc
atcaccgacggcgagcgctacaacaaggtcatcgacatctgggcggaggtcaccgagaag
gttgcccaggagatgatgcagcagatctcccaggaagaggcctctggggacaaggacggc
aagcgcgagtcgcgcaagcagccctcgttcaaccccatctacatcatggccgactccgga
gcgcgtggtagcgcccagcagatccgtcagctggccggtatgcgcggcctgatggcgaag
ccgtccggcgaaatcatcgagacgcccatcaccgcgaacttccgcgagggcctctccgtg
ctgcagtacttcatctccacgcacggcgctcgtaagggtctggcggacacggcgctcaag
acggccaactccggttacctcacccgccgtctcgtcgacgtggcgcaggacgccatcatc
aacgagtacgactgcggcaccatggacggtctgttcatcggcgccctggtcgagggtggt
gagatcatcgagccgctcggcgagcgcatcctgggccgcgtggccctggacgacatcctc
gaccccgtcacgggcgaggtgctggtgcgcgccaacgaggagatcgacgaggaccgcgtc
cgccgcatcgagaacagcggtctggacaaggtgaagatccgctcggtgctcacgtgccag
gccaagcgcggcatctgcgtggagtgctacggccgtgacctggcgcgtggccgcaaggtg
tccgtgggcgaggccgtcggcgtcatcgcggcgcagtccatcggtgagccgggtacgcag
ctgacgatgcgcaccttccacatcggtggcgcggcgacgcggcgcgcggagcagtccagc
ctggagaaccgctacgcgggtcgcgtgaagttcgcgggtctcatcacggtgcagaagatg
gacggcacgctggtggcgatgaaccgcaacggcgagctcgtcgtggtcgacgactccggc
cgtgagcgcgagcgctaccaggtcatctacggcgcccgcatcctggtgaaggaaggccag
cgcatcgagccgggcaccctggtggccgagtgggacccgttcgcgattccgctgctcacc
gaagtcggcggcgtcgtccggtacgaggacatcatcgaaggcgtcacgatgtccgagacg
ctggacgaggtgacgggtctgtcgcgaaagaccatcatcgagtccaaggacccggaggcg
cgtccgcgcgtctccatccgcgatgcccagggcaacacgaaggacctgccctcgtcccgc
aacccggcgagctacttcctgccgcagggctccatcatcaccgtcaacgacggcgatgaa
atccacccgggcgaagtcatcgccaaggtgccgcgcgagacgaccaagacgaaggacatc
acgggcggtctgccccgcgtggccgagctgttcgaggcgcgcaagccgaaggatgccgcg
gccatcgcggagatcgacggcgtggtgtcgttcggcaaggacaccaagggcaagcgcaag
ctcatcatcacccccgaggtgaatggcgagcagcgcacggacctggccaaggagtatttg
atctccaagggcaagaacatcagcgtccactccggcgaccgcgtgaaggccggcgaggcg
atgatggacggcgcggccaacccgcacgacatcctcaaggtcctgggcgagaaggaactc
gcgcgctacctggtggacgaagtgcaggaagtctaccggctccagggcgtgaagattaac
gacaagcacatcgagaccatcgtgcggcagatgctccgccgcgtgcgcgtcaccgatgtg
ggcgacaccaacttcctggtcgacgagcaggtcgagaagtgggtgttcgaggaggagaac
gagaagatcatggccgagggcaagcgcccggccgtgggtgagccgctgctgctcggcatc
accaaggcctcgctctccaccgagtcgttcatctcggcgtcttccttccaggagaccacg
aaggtgctcaccgaggccgccatcaacggcaaggtggactacctccgcggcctcaaggag
aacgtcatcatgggccggctcatccccgccggcacgggcctgccgaactacaagcacctc
gacatcgaggtggagagcccgaccgacgaggtcaacgagatggaggccgctctggccggt
gcccacggcgactcgggcccgctctccggcgcttcccgctcggaaggcacccagtcgacc
ggcgccgcctaa
DBGET
integrated database retrieval system
