Methanosarcina sediminis: ACSAZK_04105
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Entry
ACSAZK_04105 CDS
T11832
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
msds Methanosarcina sediminis
Pathway
msds04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
msds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
ACSAZK_04105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msds03019
]
ACSAZK_04105
03009 Ribosome biogenesis [BR:
msds03009
]
ACSAZK_04105
04131 Membrane trafficking [BR:
msds04131
]
ACSAZK_04105
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msds04147
]
ACSAZK_04105
Messenger RNA biogenesis [BR:
msds03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
ACSAZK_04105
Ribosome biogenesis [BR:
msds03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
ACSAZK_04105
Membrane trafficking [BR:
msds04131
]
SNARE
SNARE associated proteins
Others
ACSAZK_04105
Autophagy
Aggrephagy
Other aggrephagy associated proteins
ACSAZK_04105
Exosome [BR:
msds04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
ACSAZK_04105
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_2
AAA_5
AAA_14
TIP49
AAA_22
CDC48_2
AAA_33
nSTAND3
NPHP3_N
Sigma54_activat
Parvo_NS1
Mg_chelatase
NACHT
AAA_7
AAA_28
IstB_IS21
ABC_tran
RNA_helicase
AAA_24
AAA_18
NB-ARC
Zeta_toxin
AAA_17
nSTAND_NTPase5
TsaE
AAA_11
AAA_3
SLFN-g3_helicase
AAA_19
ResIII
ORC-CDC6-like
Vps4_C
Motif
Other DBs
NCBI-ProteinID:
XYY86430
LinkDB
All DBs
Position
complement(981128..983422)
Genome browser
AA seq
764 aa
AA seq
DB search
MTDEDENSIKLKVAEADQRDVGKGIVRIDEAFREKLGLKPFDVVEIRGGKTTSALVGRSY
PGDAGLDLIRMDGLIRTNAKTSIGEYVELLKAEWKEAKHVTLSPVTKGMQIYAPSEALGA
VFMNRTVSKGDFISTTSLRRSPDRDMYSKGLMFEDFFQDFFGPDFGPSFGLGEIKLQVVS
TSPPGIVKITEMTDIELLPEAVEIPPEQTIPTVMYEDLGGIKDAISKVREMIELPLKHPE
LFDRLGIDAPKGVLLHGPPGTGKTMLAKAVANESDAYFISINGPEIMSKYYGESEQRIRE
IFDEAEKNAPAIIFLDEIDSIAPKRAEVTGEVERRVVAQLLSLMDGLKSRKNVIVIGATN
RPEALDMALRRPGRFDREIELRVPDTEGRLEIFQIHTRGMPLTDDVNLNSLAQITYGFVG
ADIAALCREAAMSALRRILPKINLKEPEIPKEILDSLQVLRDDFEEAMKDVQPSAIREIL
IEVPNVSWDDVGGLDEVKCLLKEAVEWPLKHPDSFRTIGVEAPKGVLLYGPPGTGKTLIA
KAIAHESDANFITAKGSDLLSKWYGESEKRIAEVFMRARQVAPSIVFLDELDSLAPIRGA
YAGEPQVTARILNQLLSEMDGLEELRSVVVLGATNRPDIIDPALLRPGRFDELIMVPVPD
EGARREIFKVHMKKMALAEDVDPEELVSLTDRYTGADIAAVCKKAGRFALREDIHARNVC
QRHFLKAVRETGPSVTPDTMKYYEAIKGELRTKKSKEIESPYYA
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
ttgactgacgaggatgaaaattcgatcaagctgaaggttgcggaagcagaccagcgagat
gttggaaagggcattgtccgcatcgacgaagctttcagggaaaagctgggactcaagccc
tttgacgttgtggaaattcggggaggcaaaacaacctctgccctggtcgggcgttcgtat
ccaggtgatgcggggcttgacctcatccgtatggacgggcttatccgcacaaacgcaaag
acaagtatcggggaatatgtggaactcctgaaagcggagtggaaggaagcaaagcatgtg
accctgtctcccgtaacaaaagggatgcagatttatgcccccagcgaggccctgggagct
gtctttatgaaccgtacggtttcaaaaggggactttatctccaccacgagtcttcggagg
tctccggacagggatatgtacagcaaggggctcatgttcgaggactttttccaggacttt
ttcggcccggattttggcccgtcattcgggctcggggaaataaagctgcaggtggtttcg
acttctcctccggggattgtgaagatcacggaaatgaccgacatcgaactcctccccgag
gcagtggagattcctccggaacagaccatccctactgtaatgtacgaagacctgggcggg
atcaaggatgccatatccaaggtcagggaaatgattgaactgcccctgaaacaccccgaa
ctctttgacaggctcgggatcgatgctcccaagggcgtgctcctccacgggccacccggg
accgggaagaccatgcttgcaaaggcagtggcaaacgagtccgacgcctacttcatctcc
atcaacggcccggaaatcatgtccaagtattacggggaatccgaacagaggatccgggag
atctttgatgaggctgaaaagaacgctcctgctatcatcttccttgacgagatcgattcc
atcgctcccaagcgggccgaggtaacgggggaagtcgagaggagagtggtcgcccagctc
ctttccctgatggacgggctcaagagccgaaagaacgtgatcgtgatcggagcaaccaat
cgtcccgaagccctggacatggcgctgcgccgccccggaaggttcgaccgggaaatagag
ctcagggtcccggataccgaaggcaggctcgagatcttccagatacacaccaggggcatg
cctcttaccgacgacgtaaacctcaacagccttgcccagataacctatggcttcgtgggg
gcggatattgcggcgctttgccgggaagcggctatgagtgctcttcgccggatcctgcct
aaaatcaacctgaaggaacccgaaatcccgaaagagatccttgattctcttcaggtactg
agggatgactttgaagaagccatgaaagacgtccagccttccgctatccgggaaatcctg
attgaggtccccaatgtcagctgggacgatgtgggcgggcttgatgaagtaaaatgtctt
ttaaaagaagccgtggaatggccgcttaaacaccccgattccttccggactataggggta
gaggctcccaaaggcgtgcttctctacggccctccgggtacgggaaagacccttatcgca
aaagctattgctcacgagtccgatgcgaacttcatcacggccaagggaagtgacctgctc
tccaaatggtacggggaatccgaaaaacggattgctgaagtcttcatgcgggccaggcag
gttgccccgtctatcgtgttcctggatgagcttgactctcttgctcccatcagaggggct
tacgcgggggaaccccaggttacggccaggatcctgaaccagctcctgtccgagatggac
gggctcgaagagctcaggagtgtcgtcgtactcggcgcaaccaacaggccggatatcatt
gatcctgccctccttcgcccgggccgctttgacgaactcatcatggtccctgtccctgat
gaaggggccaggcgagagatctttaaggtccacatgaaaaagatggcccttgcagaggat
gttgacccggaggaacttgtatccctgactgaccggtacacaggggcagatatcgcagca
gtttgcaaaaaagccgggaggtttgccctcagggaagatatccatgcccggaatgtctgc
caaagacatttcctgaaagctgtcagggaaacaggcccctcggtcactccggacaccatg
aaatactacgaagcaataaaaggggaactcaggaccaaaaaatcaaaagaaatcgaaagc
ccgtattatgcctga
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