Methanosarcina sediminis: ACSAZK_14620
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Entry
ACSAZK_14620 CDS
T11832
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
msds Methanosarcina sediminis
Pathway
msds04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
msds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
ACSAZK_14620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msds03019
]
ACSAZK_14620
03009 Ribosome biogenesis [BR:
msds03009
]
ACSAZK_14620
04131 Membrane trafficking [BR:
msds04131
]
ACSAZK_14620
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msds04147
]
ACSAZK_14620
Messenger RNA biogenesis [BR:
msds03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
ACSAZK_14620
Ribosome biogenesis [BR:
msds03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
ACSAZK_14620
Membrane trafficking [BR:
msds04131
]
SNARE
SNARE associated proteins
Others
ACSAZK_14620
Autophagy
Aggrephagy
Other aggrephagy associated proteins
ACSAZK_14620
Exosome [BR:
msds04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
ACSAZK_14620
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_5
AAA_16
TIP49
AAA_22
AAA_14
AAA_2
AAA_25
AAA_7
IstB_IS21
AAA_33
AAA_18
nSTAND3
AAA_28
RNA_helicase
Mg_chelatase
ATPase
Sigma54_activat
Parvo_NS1
NPHP3_N
AAA_17
DUF5906
AAA_24
Zeta_toxin
SLFN-g3_helicase
bpMoxR
NB-ARC
DUF815
PhoH
AAA_lid_PRS2_C
nSTAND_NTPase5
ResIII
Motif
Other DBs
NCBI-ProteinID:
XYY85036
LinkDB
All DBs
Position
complement(3339056..3341434)
Genome browser
AA seq
792 aa
AA seq
DB search
MEEIQLKVEKAYPIDLGRGIIRLDPTALLKLQLSPGDIVEIRGKKMTTAKVWRADRQDWE
QGIVRIDNFIRQNAGVGIGERVSIKKVEAPEAKKVILALPESMTQAGGPELQFGEHANEI
IKRHILKRPVFKGDIIPIINSMTHPMTESLTTSQVIPLVAVETDPANAIVLITESTRIEL
RKKPVQGYETVARGVTYEDIGGLGQEIMRVREMIELPMKHPELFHHLNIEPPKGVILYGP
PGTGKTLIAKAVANESGASFHYIAGPEIVGKFYGESEERLRKIFEEATQEAPSVIFIDEI
DSIAPKRENVTGEVERRVVAQLLTLMDGMEERGQVVVIGATNRVDAIDPALRRPGRFDRE
IHIGVPDTNDRYEILQIHTRGMPIESDEDPVETVIETETEAEVAEEAGKTETEAGVEEVS
AEVLRKEKRVNKYLTYLAERTQGFVGADLLALVQEAAMRCLRENLPDLDLEKEAIPPERL
EKIVVTKNNFEEALMETEPSALREIFVEIPNVTWDNVGGLDEAKQAIIESVEWPIKYPHK
FLKMGIKAPKGILLYGPPGTGKTLIAQAVSRECNANFISVKGPEMFSKWLGESEKAIRET
FKKARQVAPCVIFFDEIDSIASMPGMESTDSKTSERVLNQILTEMDGLEALKDVVVIAAT
NRPNLLDPAILRPGRFDRMVYMGSPNRKGRLKIFGIHTRGIPLAADVNLDTLADETEGYV
GADIEAVCREAVMRALRENFDIEEIEMRYFREGLKKVKPTITENIAQYYEKIEEQFKGGT
KPAEPSAYIGYR
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaatacagttaaaggttgaaaaggcatatcctatcgatctcggaaggggaata
atccggcttgacccaacagcacttttgaagcttcagctctctcccggtgacattgttgaa
atcagggggaagaaaatgaccaccgcgaaagtctggagagcggaccgccaggactgggag
cagggaatcgtccgcattgacaattttatccggcaaaacgcgggagtcggaatcggggaa
agggtcagcatcaaaaaggtagaagccccggaagcaaaaaaggttatcctggcgcttccg
gaaagcatgacccaggcagggggacctgaactgcagttcggggagcacgcaaacgagatc
ataaagcggcatatcctgaaaaggccggttttcaagggagacatcattcctatcatcaac
tcgatgacccatcctatgaccgagtccctgactacaagccaggtaatcccgctcgtagca
gttgaaacggatcctgcaaacgcaatcgtcctgatcaccgagtccaccaggatcgaactc
aggaaaaaacccgtccagggctacgaaacggttgccaggggagtcacctatgaagatatc
ggagggctcgggcaagagataatgcgcgtccgggaaatgatcgagcttcccatgaaacac
ccggaactcttccaccacctgaacatcgagcctccaaaaggggtcatcctttacggcccc
cccgggaccggaaagaccctgatcgcaaaagccgtggcaaacgaatcgggtgccagcttc
cactacatcgcaggcccggaaattgttgggaagttctatggggaaagcgaggagaggctc
cggaagatctttgaggaggcaacccaggaagccccgtcggtcatattcatcgatgaaatc
gattccattgccccgaaaagggaaaacgtaacaggggaagtggaaagaagagtcgttgcc
cagcttctgaccctcatggacgggatggaagagcggggacaggttgtcgtgatcggggct
acgaaccgtgtagatgccattgacccggcactccggaggcccgggcgctttgacagggaa
atccatatcggagtcccggataccaacgataggtatgagatcctgcagatccacacaagg
ggaatgcccattgaaagtgacgaggatcccgtggaaaccgtaattgaaactgaaaccgaa
gccgaagtagccgaagaagctggaaaaaccgaaacagaagcaggggttgaagaggtttcc
gcagaagtcctcaggaaagaaaaacgggtaaacaaatacctgacgtatctggcagagcgg
acccagggttttgtgggcgcggacctgctagcccttgtccaggaagctgccatgcgctgc
ctcagggaaaacctgccggacctggatctggaaaaagaagccatacctcccgagagactg
gaaaaaatagtggtaaccaagaataacttcgaagaggccctgatggaaaccgagccttcg
gccctgagggaaatctttgtggagataccaaacgtaacctgggacaatgtgggaggcctc
gacgaagccaaacaggcaatcattgaatccgtggaatggcctattaaatacccgcacaaa
ttccttaagatgggcataaaagcccccaagggaatcctgctctacggccccccgggaacc
ggaaagaccctgatagcacaggctgtttccagggaatgtaacgccaacttcatcagcgtc
aaaggcccggaaatgttctcaaagtggctcggagaatcggaaaaagcgataagggagact
ttcaagaaagccaggcaggttgccccctgcgtgatcttctttgatgaaatcgactccatt
gcttccatgccagggatggaatccacggacagcaagacttcagaaagagtccttaaccag
atcctgaccgagatggacggcctcgaagccctgaaagacgtggttgtaatcgccgcaaca
aaccgtccgaacctgttggacccggcaatcctgaggccagggcgctttgacaggatggtc
tatatgggttcacccaaccggaaaggcaggctcaagatcttcgggattcataccagagga
ataccccttgcagcagacgtaaaccttgatacgcttgctgacgaaaccgaagggtatgtg
ggtgctgacatagaagcggtgtgcagagaagcggtaatgcgggcgcttcgcgagaatttc
gatattgaagaaatcgaaatgagatatttcagggaaggtcttaagaaggtaaagcccacg
atcacggagaacatcgcccagtattatgaaaagattgaagaacagtttaagggcggtacg
aaacctgccgaaccaagtgcttatataggatataggtaa
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