Metallosphaera sedula DSM 5348: Msed_0033
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Entry
Msed_0033 CDS
T00509
Name
(GenBank) DNA-directed RNA polymerase, subunit B' / DNA-directed RNA polymerase, subunit B'
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
mse
Metallosphaera sedula DSM 5348
Pathway
mse03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Msed_0033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mse03021
]
Msed_0033
Enzymes [BR:
mse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Msed_0033
Transcription machinery [BR:
mse03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Msed_0033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ABP94210
UniProt:
A4YCQ8
LinkDB
All DBs
Position
28796..32170
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AA seq
1124 aa
AA seq
DB search
MLSVDDRWVIVEAYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEIITEIPGLKIRLGKI
RVGKPRVREADKGDKEITPMEARLRNLTYAAPIFLTMTPVENNIEGDPTEVHIGDIPIML
KSIADPTSEFSQDKLVEIGEDPKDPGGYFIINGSERVIVTQEDLATNRVLTDVGKAGSNV
THTAKIISSTSGYRVPITIERLKDSTIHVSFPSAPGRIPFAILMRALGVETDEDITLAVS
LDPQIQNELLPSLEQASSISSKEDALDFIGNRVAIGQKREMRIQKAEQILDKYFLPHIGT
NPSDRVAKAYYLAFAVSKLIELYLGRREPDDKDHYANKRLKLAGDLFASLFRVAFKAFVK
DLVFQLEKSKVRGRRLAINALVRPDIISERIRHALATGNWVGGRTGVSQLLDRTNWLSML
SHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNIALLAQISVGINEK
SLERTLYNLGVVPIDDAIKKVKSEEGQSENYQTWSKVILNGRLIGYYPDGRELAEKIRES
RREGELSDEVNVSYNITETFNEVYINSDSGRVRRPLIVVKHGKPLVTKEDIENLKKGKIT
FDTLVKEGKIEFLDAEEEENAYIALEPKDVTKDHTHLEIWAPAILGITASIIPYPEHNQS
PRNTYQSAMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIGYTERPAGNNAI
FALMSYTGYNMEDAVIMNKSSVDRGMFRSTFFRLYSAEEIKYPGGQEDEILLPEPGVRGY
KGKDYYRLLESNGIVSPEVDVKGGDVLIGKVSPPRFLQEFKELSPDQAKRDTSIITRHGE
RGTVDLVLVTETSEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVIGMLIPQVDMPYTTSG
LVPDIILNPHALPSRMTVGQIMEAIAGKFVAATGNPIDATPFYNTPIEEIQRKLLEHGYL
SDGSEVVYDGRTGEKLKGRILFGIVYYQKLHHMVADKMHGRGRGPVQILTRQPTEGRARE
GGLRFGEMERDCLIGYGAAMLIKDRLLDNSDRATVYVCEQCGYVGWYDRTKNKYICPIHG
DKTTLYPVVISYAFKLLLQELMSMVIAPKLVLGDKVPVGGNSNE
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgctttcagttgacgatagatgggtaatagtagaggcatactttaagtccagagggtta
gtaagacagcatttagactcatttaatgattttataaagaataagcttcaggaaattata
gatgagcagggagaaataatcaccgagatacctggtctaaagattagactaggtaagata
agggtaggaaaacctagggttagggaagcagacaagggcgacaaggagataacgcccatg
gaagccaggctgagaaacctgacctacgctgccccaattttcctaaccatgacacctgta
gagaacaacatagagggagatcccaccgaggttcatataggcgatattcctattatgctc
aaatcgatagctgatccaacttcggagttcagccaagacaaactagtggaaataggagag
gatccaaaggacccaggtggatactttatcattaatggaagtgaaagagtaatcgtaact
caggaagacttagcaacaaatagagttctgactgatgtgggaaaggcgggctccaatgtt
acccatacagctaaaataatttcgagcacctctgggtatagggttcctatcaccatagag
agattgaaagattccacaatccacgtttcattcccttcagcgcccggtagaattccattc
gcaatattaatgagagcccttggggtagagaccgacgaagatattacactggcagtgtcc
cttgacccacaaatacagaacgaacttttaccttctttggaacaggcgagctctatttct
tcaaaggaagacgcattggacttcataggcaacagggtagctataggtcagaaaagggaa
atgaggatacagaaagctgaacagattttagataaatatttcttaccacatataggtact
aatccatcagatagagtagccaaggcttactatctggccttcgcagtctcaaagctgatc
gagctttatcttggcagaagggaacccgacgacaaggaccattatgctaacaagaggctg
aaattggcgggagacttattcgctagtctctttagagtagcgtttaaggcctttgttaag
gacctagtgtttcagctcgagaagtcaaaggttaggggaagaaggttagccattaatgcc
cttgtaaggcctgacataatttcggagagaattaggcatgcacttgccacaggaaattgg
gttggaggaagaacaggcgtaagccagcttttagatcgtaccaattggttatcaatgtta
agccatctaaggagggttgtatcttccctagccaggggtcagcctaactttgaggccagg
gatctacacggaacccaatggggcaggatgtgcccattcgagacaccagagggtcctaac
agcggtcttgtgaagaacatagctctcctggcccagatatcagttggaataaatgagaag
agccttgagagaactctttacaatttgggtgtagtccctatagacgacgccataaagaag
gttaagtctgaggaaggccaatctgagaattatcagacctggagcaaggtaattctaaac
gggagactaataggctattatcctgatgggcgtgaactggcagagaaaataagagagagc
agaagagagggtgagttaagcgatgaggttaatgtaagctataacattacagaaaccttt
aacgaggtatacattaattcagatagtggaagagtaagaaggccccttatcgttgttaag
cacggtaaaccacttgtgactaaggaagatatagagaacctgaaaaagggtaagataacc
tttgataccttagttaaagaggggaaaattgaattccttgatgcagaggaagaagagaat
gcgtatatagctcttgagccaaaggatgtaaccaaggaccatacccacttagagatatgg
gctccagcaattctaggcataacagcttcaattattccataccctgagcacaaccagtct
cctagaaatacctatcagtcggctatggcaaagcaggccttaggactgtatgcagccaat
tatcaaataaggacagacactagagctcatctccttcattatcctcagaagccaatagtc
caaactagggctttagaggccataggatatacggagagacctgcaggaaataatgcgata
tttgcccttatgtcctacacaggatacaacatggaagatgccgttatcatgaataagtcg
tccgtggatagagggatgtttaggtccactttcttcaggctttactccgccgaggaaatc
aagtatccaggagggcaagaggatgaaatccttcttcccgagcccggcgtaaggggatat
aagggaaaggattactataggcttctggaatctaacggaatagtttctcctgaggttgac
gttaagggaggagatgtattaatagggaaggtaagcccaccaaggttccttcaggaattc
aaggaattgtcacctgatcaggctaagcgtgatacgtcgataataactaggcacggagaa
cgtggtactgtagatctagtattggtgaccgagacctctgagggaaataagttagtaaag
gtgagagttagggacctgagaataccagaaataggagacaaattcgctactagacatggg
cagaagggagtaataggaatgctaataccccaagtggacatgccatatacaactagtggg
ctagttccagatataatactgaatcctcatgcgcttccctccagaatgactgtaggtcag
ataatggaagcgatagcaggaaagttcgtagcagccactggtaatcctattgacgcaaca
ccgttctataatactcccatagaggaaattcagaggaagcttctggaacatggttatcta
agcgacggatcagaggttgtatatgatggtagaacaggagagaaattgaaaggaagaata
ttgtttggtatagtttactatcaaaaattacaccatatggtagcggataagatgcatggg
cgtggtagagggccagttcaaatactcactagacagcccaccgaaggaagagctagggaa
ggaggacttagatttggggaaatggaaagggactgccttataggatacggtgcagcgatg
ttaatcaaggatagattactagataactcagatagggcaacagtatacgtttgtgaacag
tgcggatatgtaggctggtatgataggactaagaacaagtatatatgcccaattcatggt
gataagacaactttataccccgtggtaatatcatatgccttcaagttgttgcttcaggaa
cttatgagcatggttatcgcacctaagttagttctgggagacaaagttcctgttggaggt
aattccaatgagtga
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