Metallosphaera sedula DSM 5348: Msed_0076
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Entry
Msed_0076 CDS
T00509
Name
(GenBank) ribosomal RNA-processing protein RRP4
KO
K03679
exosome complex component RRP4
Organism
mse
Metallosphaera sedula DSM 5348
Pathway
mse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Msed_0076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mse03019
]
Msed_0076
Messenger RNA biogenesis [BR:
mse03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Msed_0076
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Msed_0076
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
KH_6
S1
KH_1
RRP40_S1
Motif
Other DBs
NCBI-ProteinID:
ABP94253
UniProt:
A4YCV1
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All DBs
Position
68918..69661
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AA seq
247 aa
AA seq
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MSTENKIYLQDRTVVVPGDLIAEGNFQIPWSPYVIKQGNKYYASVIGVVEVKDSIFEVIP
LEGSHYYPRIGDTVIALVEDVELYGWTTDIKAPYSAYLPASSLLGRPANVGEDLRRYIDV
GDYVIAKVESFDRTSDPVLSVKGKGLGRVSSGTVIDILPVKVPRVVGKGKSMLETLSTET
GCDILVAQNGRVLANCPSKEKENVLIMAIRTIERESHTKGLTDRIKKLIKESLGDNSVTS
SEAQTNT
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgtccacagaaaacaagatatatctacaggataggaccgtggtagtccctggagatcta
atagctgagggaaattttcaaataccatggtctccttacgtaattaagcagggaaacaag
tactacgcttcggttattggagtagttgaggttaaggattctatctttgaagtgattcct
ctggaaggctcccactattatcccagaataggggatactgtgatagcgttggtcgaggat
gtagaactgtatggttggactactgacatcaaagctccctactctgcttacctaccagca
tcgtctcttttaggaaggccagccaatgtcggtgaagatctaaggcgttatatagatgtg
ggggattacgtgattgcgaaggttgagagctttgatagaactagcgatcctgttctatca
gtgaagggaaagggactagggagagtttcatctggtacggttattgatatccttccagtc
aaggttcctagggttgtgggaaagggaaagagcatgttggagactttgagcacagagacc
ggatgcgatatccttgtggctcagaatgggagggtactagccaactgtccatcaaaggaa
aaggaaaatgttctaataatggccatcaggaccattgagcgtgagtcccacaccaaagga
ttgactgatagaattaaaaaactaataaaagaatcactaggtgataacagtgttacaagt
tcagaagcccaaactaatacttga
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