Metallosphaera sedula DSM 5348: Msed_0134
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Entry
Msed_0134 CDS
T00509
Name
(GenBank) DEAD_2 domain protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mse
Metallosphaera sedula DSM 5348
Pathway
mse03022
Basal transcription factors
mse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mse00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Msed_0134
09124 Replication and repair
03420 Nucleotide excision repair
Msed_0134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mse03021
]
Msed_0134
03400 DNA repair and recombination proteins [BR:
mse03400
]
Msed_0134
Enzymes [BR:
mse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Msed_0134
Transcription machinery [BR:
mse03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Msed_0134
DNA repair and recombination proteins [BR:
mse03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Msed_0134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
nSTAND3
TsaE
Motif
Other DBs
NCBI-ProteinID:
ABP94311
UniProt:
A4YD09
LinkDB
All DBs
Position
complement(108871..110484)
Genome browser
AA seq
537 aa
AA seq
DB search
MEITLREWQKQKFDEALNALKTKNTLLLNVTTGAGKTLFTLLLGKALHKKILFLTRTHSE
FEAVRREAERLGLKVAYLFGKNSVCPFATDDVKPEDIECRECSLRDKIKDLSGLKPFQIL
QLSKDASDFCPYHSLRALITKVDVIVASYMYFFNPFLRRKIVCGSQDCIKPDELLVIVDE
AHNLINGDEWFSKKIGKKTVNNALKELDEVESNTNNDLGDVRAFLVELGKFLENIVDDGG
CRELPLYPKPSAEVLLQIHKASLSYLNMIKGPIKRSYLRSVYDFFNTEGDTFNCNGKLMV
IPSDTIEMIKESFNFADKRVLMSGTLPDLGLEGYRINVEVRLGKAEYYYCSSVNSRVRYR
RANAEKYAEIIKKVYDGASSNILVFFPSYDFKSEVKKYLNGLPMLEESKRITHEEILELM
KEGKYAVLLVMRAKESEGVEFRDEGNRNLFSDMVLAGLPYPDVSDALIKRRIEKLSKVTK
KTEEEVAKELTLITIKQTIGRAFRDPNDYVKIYLCDSRYREYFSDLGISEKEIKLFA
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggaaataactttgagggaatggcagaaacagaaattcgatgaagctttgaacgcttta
aagactaaaaatacgcttctcctcaatgtaactactggagctggaaaaacactatttaca
ctactgttaggtaaagcactgcataagaagatcctattccttacaagaacgcacagtgag
tttgaggcagtgaggcgggaagcagaaagattagggcttaaagtagcctacctctttggc
aagaactctgtctgtccattcgcaaccgatgacgttaagcctgaggacatagagtgcagg
gaatgttcattgagggataaaattaaggacttaagtggattaaagccatttcaaatactt
caattgagtaaggacgcttctgatttctgcccttaccattctcttagggctttaataact
aaggtagacgttatcgtagcttcctacatgtacttcttcaacccctttctgaggaggaag
atagtatgcgggtcacaagactgtattaaaccggacgagctcttagtaattgtagatgaa
gctcacaatttgatcaatggggatgagtggttttctaagaagataggcaaaaagactgta
aacaatgcattgaaggagttggatgaggtagagagcaatacgaataacgatttgggtgat
gttagggcatttctcgtagaactgggtaagtttttggaaaatatagtggatgatggaggg
tgtagggaattgcctttgtatcctaaaccttcagctgaagtcttactgcaaatccataaa
gcctcattatcttaccttaatatgataaaaggacctattaagaggtcttatttgaggtca
gtatacgatttctttaatactgaaggtgatacgtttaactgcaacggaaagctcatggta
atcccttcagatactatagagatgataaaagagtcattcaattttgcagataaaagggta
ttaatgagcggtactttgccggatttaggtttagaaggatataggataaacgttgaagtt
agattggggaaagcggaatactattactgcagttctgttaattccagagttaggtacagg
agggctaacgctgaaaaatatgcagaaatcataaaaaaggtctatgatggggcttcctca
aatatcttagtcttctttccaagctatgattttaagagtgaggtgaagaagtaccttaac
ggtttacccatgttggaggagagtaagaggataactcatgaggaaatactggagcttatg
aaggaggggaaatatgcggtacttttggttatgagggcaaaggaaagtgagggagtggag
tttagagatgagggtaataggaacttatttagtgatatggtgcttgctggtttgccttat
ccagatgtcagtgatgctttaattaagagaagaattgagaaactatctaaggttactaag
aagactgaggaggaagtggcaaaggaactaactttgattactataaagcagactattggc
agggcttttcgtgaccctaacgattatgtcaagatttacctttgtgattcaagatacagg
gagtacttttctgacttgggtatttccgaaaaagagattaagctttttgcttag
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